Table 1. Allele frequencies of the 722 SNPs for the four breeds.
| Breed | SNP tested | SNP with >50% of genotypes | SNP with MAF>0 | SNP with MAF>0.05 | Ho5 | He6 | % of SNP not in HWE7 |
| BMD1 | 722 | 663 (91.8%) | 409 (61.7%) | 325 (49.0%) | 15.1 | 14.8 | 1.5 |
| FCR2 | 722 | 665 (92.1%) | 455 (68.4%) | 384 (57.7%) | 17.1 | 17.9 | 2.4 |
| GR3 | 722 | 665 (92.1%) | 509 (76.5%) | 443 (66.6%) | 23.7 | 22.3 | 2.4 |
| ROT4 | 722 | 667 (92.4%) | 436 (65.4%) | 363 (54.4%) | 18.0 | 17.9 | 2.8 |
1
Bernese mountain dogs.
2
Flat-coated retrievers.
3
Golden retrievers.
4
Rottweilers.
5
observed heterozygosity.
6
expected heterozygosity.
7
percentage of SNP rejecting Hardy-Weinberg equilibrium.