Table 1.
Crystallographic and refinement data
| Parameter | Crystal |
|
|---|---|---|
| α3β1γ:GDP-Mg2+ | α3βγ:GDP-Pi | |
| Data collection wavelength, Å | 0.9795 | 1.007 |
| X-ray source | id14eh4 | id23eh1 |
| Space group | C2 | P3221 |
| Cell parameters | ||
| a/b/c, Å | 122.1/51.8/98.0 | 118.6/118.6/160.9 |
| β, ° | 94.4 | — |
| Unique reflections | 31,835 | 21,823 |
| Resolution, Å | 2.15 | 3.2 |
| Completeness, % | 95.3 | 98.7 |
| Redundancy | 2.3 | 4.3 |
| Rsym (I),* % | 5.2 (32.0) | 11.1 (33.8) |
| R/RFree,† % | 21.7/26.4 | 25.4/31.4 |
| rmsd bonds, Å | 0.0067 | 0.0089 |
| rmsd angles, ° | 1.337 | 1.708 |
| Residues in model | ||
| γ | 2–34; 49–340; 348–415; GDP-Mg2+ | 2–415; GDP, Pi |
| β | 2–19 | 3–22; 28–139; Zn |
| α3 | 176–265 | 174–266 |
| Mean B values | ||
| γ | 47 | 57 |
| β | 62 | 64 |
| α3 | 38 | 113 |
| GDP | 59 | 67 |
| Pi | — | 72 |
| Mg2+ | 51 | — |
| Zn (β subunit) | — | 58 |
| Water | 48‡ | 29§ |
Ramachandran plots are shown in SI Fig. 10.
*Values in parentheses are Rsym (I) in the highest shell of resolution.
†Rfree was calculated with 6% of the reflections.
‡Included in the model were 253 water molecules.
§This value corresponds to the B value of the Pi bound water molecule.