Table 3.
ERVs with a p53 site enriched in PET loci
Locus category | No. of loci | Loci with p53 sites | Loci with p53 sites in ERV |
---|---|---|---|
PET1 (low confidence) | 61,160 | 1,722 | 150 (8.7%) |
PET2 (medium confidence) | 1,452 | 281 | 67 (23.8) |
PET3+ (high confidence) | 327 | 250 | 89 (35.6) |
PET1, PET2, and PET3 + were defined by ref. 16 as potential p53 binding regions with different confidence. The number of loci in each category is listed in the second column. The third column contains the number of loci that have a predicted, near-perfect p53 site. The last column indicates the number and fraction of these predicted p53 sites residing in ERVs.