Table 2.

The performance of various SVM models

	Cytoplasmic		Integral Membrane		Secretory		Membrane-attached		Overall accuracy	Average accuracy
Input Pattern	ACC ± sd	MCC	ACC ± sd	MCC	ACC ± sd	MCC	ACC ± sd	MCC	ACC	ACC
Amino Acid Composition	88.82 ± 5.4	0.77	86.07 ± 7.5	0.71	44.00 ± 42.2	0.57	55.00 ± 19.4	0.58	82.51	68.47
Dipeptide Composition	89.41 ± 7.8	0.72	81.09 ± 7.5	0.67	50.00 ± 36.8	0.60	50.00 ± 17.4	0.57	80.39	67.63
PSSM profile	94.71 ± 4.8	0.85	87.81 ± 6.1	0.80	44.00 ± 42.2	0.48	68.33 ± 28	0.69	86.62	73.71

ACC: Accuracy; MCC: Matthews correlation coefficient; sd: Standard Deviation