Table 7.
Number of proteins remaining in various locations, after removing redundant proteins, at cut-off 40%, 60% and 90% using program CD-HIT
| Sequences remaining after removal of similar sequences | ||||
|---|---|---|---|---|
| CD-HIT cut-off (% identity) | Cytoplasmic (340*) | Integral-membrane (402) | Secretory (50) | Membrane-attached (60) |
| 90 | 223 | 262 | 34 | 38 |
| 60 | 118 | 195 | 20 | 29 |
| 40 | 117 | 182 | 17 | 27 |
* Number in bracket is total number of proteins in a location