TABLE 3.
Location of the significant DArT markers associated with stem rust in ESWYT set 1 (ESWYTs 1, 6, 10) and ESWYT set 2 (ESWYTs 20 and 24) using linear mixed model 1 (LMM1) and linear mixed model 2 (LMM2) for each chromosome and the reported Sr genes and QTL
| Short arm (S)
|
Long arm (L)
|
Unknown arm
|
||||
|---|---|---|---|---|---|---|
| Chromosome | DArT (wPt) | Sr gene and QTL | DArT (wPt) | Sr gene and QTL | DArT (wPt) | Sr gene |
| 1A | — | — | — | — | — | — |
| 1B | 8949, 1328, 3465, 4434, 6427, 8986, 1781, 5065, 2614, 5678, 5363, 6777, 5801, 6117, 6833, 8616 | Sr31 | — | Sr14 | 1139, 2019, 1589 | — |
| 1D | — | Sr45 | — | Sr33 | — | Sr18 |
| 2A | — | Sr38 | — | Sr21 | — | Sr32, -34 |
| 2B | 0100, 9402 | Sr19, -23, -36, -40 | — | Sr9a, -9b, -9d, -9e, -9f, -9g, -16, -20, -28 | — | Sr10, -32, -34, -39 |
| 2D | — | Sr6 | — | — | — | — |
| 3A | — | — | 5662 | Sr35 | — | Sr27 |
| 3B | 0365, 0995, 5716, 7015, 8352, 8993, 9170, 5105, 6802, | Sr2, -12 | — | — | — | — |
| 3D | — | — | — | Sr24 | — | — |
| 4A | 2788 | — | 2084, 3795, 7807, 4487 | Sr37 | 5434 | — |
| 4B | 8650 | — | — | Sr7a, -7b | — | — |
| 4D | — | — | — | — | — | Sr41 |
| 5A | — | — | — | — | — | — |
| 5B | — | — | 4996 | — | — | — |
| 5D | — | — | — | Sr30 | — | — |
| 6A | — | Sr8a, -8b | 7623 | Sr13, -26 | — | — |
| 6B | 7662, 1922, 3130, 9990, 6994, 8239, 4720, 3304, 1852, 7777, 3733 | — | 0171, 9256, 1541 | Sr11 | 1541, 5596 | — |
| 7A | — | — | — | Sr15, -22 | 4748 | — |
| 7B | — | — | 1149, 5343, 0600 | Sr17 QTLa | — | — |
| 7D | 2565 | Sr44 | — | Sr25 | 3923, 5674 | |
The locations of Sr genes as per the USDA–ARS Cereal Disease Lab (http://www.ars.usda.gov/Main/docs.htm?docid=10342) and other publications are shown. The significant DArT markers and Sr genes with unknown location are given in the last two columns. Underlined genes are not present or not known to be present in the lines included in this study.