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. 2007 Nov;177(3):1839–1850. doi: 10.1534/genetics.107.077628

TABLE 1.

Expectation (ɛ(X)), variance (Inline graphic(X)), and conditional expectation (ɛ(X | QTL i)) of the contrast between the two homozygous marker classes at the position of QTL i and conditional expectation (ɛ(X | QTL i × QTL j)) of the interaction between the two homozygous marker classes at the positions i and j for X = Z1, Z2, Z3, and H3 in terms of genetic effects of the F2-metric under digenic epistasis in the absence of linkage

Statistica
Variable X ɛ(X) Inline graphic ɛ(X | QTL i) ɛ(X | QTL i × QTL j)
Z1
graphic file with name M9.gif
graphic file with name M10.gif
graphic file with name M11.gif
aaij + ddij
Z2
graphic file with name M12.gif
graphic file with name M13.gif
graphic file with name M14.gif
adij + daij
Z3
graphic file with name M15.gif
graphic file with name M16.gif
graphic file with name M17.gif
2ddij
H3 μ
graphic file with name M18.gif
ai aaij

For description of Z1, Z2, Z3, and H3 and for notation of genetic effects see materials and methods.

a

Summation is over the entire set of QTL involved in the trait expression.

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