Table 3.

Empirical power and false-positive rate when two unlinked regions are in LD with disease alleles

Model	Forest			FAMHAP*
	Power†	Power‡	FPR§	Power¶	Power‖
Ep-1	0.995	0.695	0.035	1.000	0.010
Ep-2	1.000	0.840	0.015	1.000	0.000
Ep-3	1.000	1.000	0.002	1.000	0.000
Ep-4	1.000	0.838	0.008	1.000	0.000
Ep-5	1.000	0.982	0.017	1.000	0.000
Ep-6	1.000	1.000	0.000	1.000	0.002
Het-1	0.977	0.363	0.040	1.000	0.163
Het-2	1.000	0.795	0.007	1.000	0.050
Het-3	1.000	1.000	0.000	1.000	0.002
S-1	0.967	0.347	0.037	0.998	0.213
S-2	0.995	0.013	0.035	0.998	0.002
S-3	1.000	0.895	0.013	1.000	0.003
Ad-1	0.993	0.560	0.028	0.998	0.027
Ad-2	0.970	0.187	0.033	0.995	0.158

*False-positive rate is not available.

^†φ ₁ = P (identify at least one correct haplotype).

^‡φ ₂ = P (identify both haplotypes correctly)

^§False-positive rate.

^¶φ ₄ = P (identify at least a SNP in one region).

^‖φ ₅ = P (identify at least a SNP in each of the two regions).