Table 4.

Empirical power and false-positive rate when only one of the two unlinked regions is in LD with disease alleles

Model	Forest		FAMHAP
	Power	False-positive rate	Power*	False-positive rate†
Ep-1	0.973	0.032	0.998	0.088
Ep-2	1.000	0.002	0.998	0.018
Ep-3	1.000	0.003	1.000	0.003
Ep-4	0.980	0.008	0.975	0.183
Ep-5	1.000	0.005	0.998	0.015
Ep-6	0.998	0.007	0.997	0.093
Het-1	0.887	0.060	0.968	0.232
Het-2	0.998	0.002	0.998	0.118
Het-3	1.000	0.002	0.998	0.080
S-1	0.883	0.047	0.968	0.250
S-2	0.143	0.053	0.128	0.078
S-3	0.992	0.013	0.997	0.083
Ad-1	0.970	0.020	0.955	0.175
Ad-2	0.782	0.058	0.880	0.270

*φ₆ = P (identify at least a SNP in the region in LD with disease alleles).

^†FP₂ = P (identify at least a SNP in a neutral region).