TABLE 2.
Prevalence of selected genes within SCG type
| Gene | No. (%) of isolates with gene:
|
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| M. bovis |
M. tuberculosis
|
Total | |||||||||
| SCG-1 | SCG-2 | SCG-3a | SCG-3b | SCG-3c | SCG-4 | SCG-5 | SCG-6a | SCG-6b | |||
| KatG | 0 | 12 (5.0) | 29 (12.1) | 12 (5.0) | 51 (21.3) | 12 (5.0) | 16 (6.7) | 81 (33.9) | 22 (9.2) | 4 (1.8) | 239 (100) |
| KatG315 | 0 | 12 (5.4) | 25 (11.5) | 11 (5.1) | 45 (20.1) | 12 (5.4) | 14 (6.4) | 78 (35.9) | 17 (7.8) | 3 (1.4) | 217 (100) |
| KasA | 0 | 8 (16.7) | 1 (2.1) | 0 | 0 | 0 | 0 | 39 (81.2) | 0 | 0 | 48 (100) |
| InhA | 0 | 3 (7.1) | 4 (9.5) | 2 (4.8) | 10 (23.8) | 1 (2.4) | 2 (4.8) | 12 (28.6) | 8 (19.0) | 0 | 42 (100) |
| Inh promoter | 0 | 3 (7.9) | 4 (10.5) | 2 (5.3) | 9 (23.7) | 1 (2.6) | 2 (5.3) | 10 (26.3) | 7 (18.4) | 0 | 38 (100) |
| Inh open reading frame | 0 | 1 (11.1) | 0 | 1 (11.1) | 2 (22.2) | 0 | 1 (11.1) | 3 (33.3) | 1 (11.1) | 0 | 9 (100) |
| AhpC | 0 | 1 (1.7) | 1 (1.7) | 17 (28.3) | 10 (16.7) | 0 | 11 (18.2) | 13 (21.7) | 6 (10.0) | 1 (1.7) | 60 (100) |
| Ndh | 0 | 1 (7.1) | 0 | 0 | 0 | 1 (7.1) | 0 | 12 (85.7) | 0 | 0 | 14 (100) |