Table 1.
Ku70-deficient ES cells fail to support both signal and coding joining in V(D)J recombination
Cell line | pJH200 (signal joining)
|
pJH290 (coding joining)
|
|||||
---|---|---|---|---|---|---|---|
(Ampr + Camr)/Ampr | % | Relative level | Fidelity, % | (Ampr + Camr)/Ampr | % | Relative level | |
Exp. I | |||||||
Wild type (J1) | 144/6,970 | 2.1 | 1.0 | 100 (4/4) | 51/5,270 | 0.97 | 1.0 |
Ku70SKO | 267/32,300 | 0.83 | 0.4 | 100 (4/4) | 93/9,520 | 0.98 | 1.0 |
Ku70DKO | 1/17,510 | 0.0057 | 0.0027 | 0 (0/1) | 7/6,800 | 0.1 | 0.1 |
Exp. II | |||||||
Wild type (J1) | 24/9,690 | 0.25 | 1.0 | 100 (6/6) | 1,132/251,600 | 0.45 | 1.0 |
Ku70SKO | 49/29,920 | 0.16 | 0.64 | 100 (6/6) | 104/42,330 | 0.25 | 0.55 |
Ku70DKO | 0/13,430 | <0.007 | <0.02 | — | 5/41,140 | 0.012 | 0.027 |
Exp. III | |||||||
Wild type (J1) | 136/96,000 | 0.14 | 1.0 | 100 (6/6) | 99/29,600 | 0.45 | 1.0 |
Ku70SKO | 66/75,200 | 0.088 | 0.63 | 100 (6/6) | 47/21,600 | 0.22 | 0.67 |
Ku70DKO | 0/5,950 | <0.01 | <0.07 | — | 7/206,400 | 0.0034 | 0.01 |
Exp. IV | |||||||
Wild type (J1) | 105/6,720 | 1.56 | 1.0 | 100 (6/6) | 262/37,500 | 0.7 | 1.0 |
Ku70SKO | 148/17,880 | 0.83 | 0.53 | 100 (6/6) | 279/44,040 | 0.63 | 0.9 |
Ku70DKO | 2/24,210 | 0.0083 | 0.0053 | 0 (0/2) | 3/13,230 | 0.023 | 0.03 |