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. 2008 Jan 15;94(2):550–561. doi: 10.1529/biophysj.107.113308

FIGURE 2.

FIGURE 2

(a) PMF associated to DSI sliding along the DNA minor groove. Standard deviation is reported in the inset. (b) Schematic view of the configuration corresponding to the free energy minimum. (c) Structures of three relevant conformations of the complex. The third structure (from the left) was rotated ∼40° about the helical axis to center the drug for visualization. Molecular surfaces of drug and DNA are depicted in transparent red and blue, respectively.