Table 1.
Sequence | IC50,
μM
|
Tm, °C | |
---|---|---|---|
23°C | 37°C | ||
3′-GAGUCAAUCCCAAUCUG-5′ (RNA template) | |||
1 CAGUUAGGGUUAG | 0.002 | 0.008 | 58 |
1d CAGTTAGGGTTAG (DNA) | 12 | ND | 46 |
1p CAGTTAGGGTTAG (PNA) | 0.01 | 0.02 | 76 |
2 GACUUAGAAUUAG (mismatch) | >33 | ND | 38 |
3 GAGUUAGGG | 0.02 | 0.2 | 53 |
4 AGUUAGGG | 0.03 | 1.0 | 47 |
5 GUUAGGG | 0.3 | 0.7 | 35 |
8 UUAGGG | 0.3 | 11 | 28 |
7 CAGUUAGGGUUAG | 0.002 | 0.003 | 59 |
8 CAGUUAGAAUUAG (mismatch) | 0.6 | 3.0 | 34 |
9 CAGUUAGGGUUAG | 0.007 | 0.03 | 56 |
10 CAGUUAGAAUUAG(mismatch) | 0.07 | 0.2 | 29 |
11 UGACUGUGAUGGA(mixed) | 0.1 | 0.7 | ND |
All oligomers are 2′-O-meRNA unless otherwise noted. The PNA is listed N to C termini. ND, not detectable. Underlined nucleotides have phosphorothioate linkages. Reported melting temperatures are ±1°C or less.