TABLE 2.
Species and origins of reference strains used for validation of the Akkermansia muciniphila primers (AM1 and AM2) and probe (MUC-1437)
| Species | Originb |
|---|---|
| Akkermansia muciniphila | ATCC BAA-835 |
| Atopobium minutuma | DSM 20586 |
| Bacteroides distasonis | DSM 20701 |
| Bacteroides fragilisa | DSM 2151 |
| Bacteroides pyogenes | CCUG 15419 |
| Bacteroides tectus | CCUG 25929 |
| Bacteroides thetaiotaomicrona | RRI |
| Bacteroides uniformisa | DSM 6597 |
| Bifidobacterium lactisa | DSM 10140 |
| Bifidobacterium bifiduma | DSM 20082 |
| Bifidobacterium adolescentisa | DSM 20083 |
| Bifidobacterium brevea | DSM 20091 |
| Bifidobacterium longuma | DSM 20090 |
| Clostridium aminophilum | ATCC 49906 |
| Clostridium sticklandii | ATCC 12662 |
| Clostridium perfringensa | DSM 756 |
| Clostridium sporogenes | DSM 1664 |
| Colinsella aerofaciensa | DSM 3979 |
| Coprococcus sp.a | RRI |
| Enterococcus faecalis | RRI |
| Escherichia colia | NCTC 12900 |
| Eubacterium biforme | DSM 3989 |
| Eubacterium cylindroides | RRI |
| Eubacterium rectale | RRI |
| Eubacterium ruminantium | RRI |
| Faecalibacterium prausnitzii | RRI |
| Lachnospira multiparus | RRI |
| Lactobacillus acidophilusa | ATCC 4356 |
| Lactobacillus amylovorusa | DSM 20531 |
| Lactobacillus rhamnosusa | ATCC 53103 |
| Lactobacillus plantaruma | NCIMB 8826 |
| Lactobacillus reuteria | DSM 20016 |
| Megasphaera elsdenii | NCIMB 8927 |
| Mitsuokella multiacidus | RRI |
| Peptostreptococcus anaerobius | ATCC 27337 |
| Pepstostreptococcus micros | DSM 20468 |
| Prevotella albensis | DSM 11370 |
| Prevotella brevis | ATCC 19188 |
| Prevotella bryantiia | DSM 11371 |
| Prevotella ruminocolaa | ATCC 19189 |
| Roseburia intestinalis | RRI |
| Ruminococcus albus | RRI |
| Ruminococcus bromii | RRI |
| Ruminococcus flavefasciens | RRI |
| Ruminococcus hansenii | DSM 20583 |
| Ruminococcus productus | DSM 2950 |
| Streptococcus bovis | RRI |
| Veilonella parvula | RRI |
| Victivallis vadensisa | DSM 14823 |
a
The strains of these species were tested using the AM1 and AM2 primers.
b
RRI, Rowett Research Institute (Aberdeen, United Kingdom).