TABLE 4.

Genomic comparison of strains T1016 and Pstau relative to NCTC 11168

GeneIDa	Putative protein	Microarray differential	Gene conservation assessment (T1016, Pstau)b
Cj0030	Hypothetical protein	−2.31	A, C
Cj0057	Periplasmic protein	−2.27	D, C
Cj0177	Outer membrane siderophore	−2.77	A, C
Cj0178	Outer membrane siderophore	−3.45	A, C
Cj0179	Biopolymer transport protein	−2.48	D, C
Cj0180	Biopolymer transport protein	−2.56	D, C
Cj0181	TonB transport protein	−2.52	A, C
Cj0481	Lyase	−3.03	A, C
Cj0483	Altronate hydrolase C-terminus	−2.81	A, C
Cj0484	Transmembrane transport protein	−2.53	D, C
Cj0486	Sugar transport protein	−2.33	D, C
Cj0490	Aldehyde dehydrogenase C-terminus	−2.85	A, C
Cj0690c	Restriction/modification enzyme	−3.16	A, C
Cj0727	Periplasmic solute-binding protein	−2.46	A, C
Cj0728	Periplasmic protein	−2.90	A, C
Cj0730	ABC transport system permease	−2.57	A, C
Cj0731	ABC transport system permease	−3.00	A, C
Cj0732	ABC transport system ATP-binding protein	−2.53	A, C
Cj0733	Hypothetical protein	−2.72	A, C
Cj0736	Hypothetical protein	−4.18	A, C
Cj0741	Hypothetical protein	−3.02	A, C
Cj0755	Iron uptake protein	−3.11	A, C
Cj0860	Integral membrane protein	2.60	C, A
Cj1055c	Integral membrane protein	2.73	C, A
Cj1141 (neuB1)	N-Acetylneuraminic acid synthetase	−1.78	A, D
Cj1307	Amino acid activating enzyme	−2.57	A, C
Cj1417c	Hypothetical protein	2.00	C, D
Cj1420c	Hypothetical protein	3.16	C, A
Cj1439c	UDP-galactopyranose mutase	−1.20	A, D
Cj1442c	Hypothetical protein	2.36	C, A
Cj1555c	Hypothetical protein	−2.29	A, D
Cj1585c	Oxidoreductase	−3.13	C, A
Cj1668c	Periplasmic protein	−1.64	A, C
Cj1678	Lipoprotein	2.33	A, C
Cj1727c	MetY, O-acetylhomoserine (thiol)-lyase	−2.80	D, C
LIO87_ORF18d		3.00	D, A
CjPO3_Cj1135	Two-domain glycosyltransferase	−1.46	A, D
RM1221_ORF0432	Virulence plasmid	−1.94	A, D
RM1221_ORF0433	Virulence plasmid	−2.05	A, D
RM1221_ORF0434	Virulence plasmid	−1.35	A, D
RM1221_ORF1270	Virulence plasmid	−2.88	A, D
RM1221_ORF1280	Virulence plasmid	−3.46	A, C
RM1221_ORF1704	Virulence plasmid	−3.17	A, C
RM1221_ORF1956	Virulence plasmid	1.56	D, A

^aClusters of genes that differ between strains are in bold font. ID, identifier.

^bA, likely to be absent; C, likely to be conserved; D, likely to be divergent.