TABLE 1.
DNA microarray-predicted deletions and sequence changes in the T. paraluiscuniculi Cuniculi A genome: T. paraluiscuniculi ORFs with the lowest ASRCuniculi A/Nichols
| ORF | ASRCuniculi A/Nichols | Predicted protein function (gene) | Family | Predicted ORF length (bp) based on the Nichols genome |
|---|---|---|---|---|
| TP0136 | 0.14 | Hypothetical protein | PGF15 | 1,488 |
| TP0127 | 0.14 | Hypothetical protein | PGF14 | 690 |
| TP0137 | 0.17 | Hypothetical protein | PGF15 | 138 |
| TP0315 | 0.19 | Hypothetical protein | PGF14 | 648 |
| TP0619 | 0.23 | Hypothetical protein | PGF14 | 813 |
| TP0134 | 0.28 | Hypothetical protein | PGF15 | 376 |
| TP0617 | 0.46 | Hypothetical protein | PGF14 | 279 |
| TP0462 | 0.47 | Hypothetical protein | PGF15 | 843 |
| TP0618 | 0.48 | Hypothetical protein | PGF14 | 360 |
| TP0117 | 0.49 | TprC (tprC) | PGF2 | 1,797 |
| TP0128 | 0.52 | Hypothetical protein | 348 | |
| TP0135 | 0.56 | Hypothetical protein | PGF15 | 942 |
| TP0131 | 0.58 | TprD (tprD) | PGF2 | 1,797 |
| TP0621 | 0.58 | TprJ (tprJ) | PGF2 | 2,277 |
| TP0316 | 0.6 | TprF, authentic frameshift (tprF) | PGF2 | 1,195 |
| TP0620 | 0.61 | TprI (tprI) | PGF2 | 1,830 |
| TP0897 | 0.63 | TprK (tprK) | PGF2 | 1,518 |
| TP0129 | 0.66 | Hypothetical protein | 477 | |
| TP1031 | 0.66 | TprL (tprL) | PGF2 | 1,545 |
| TP0317 | 0.68 | TprG (tprG) | PGF2 | 2,271 |
| TP0970 | 0.68 | Hypothetical protein | 117 | |
| TP0896 | 0.7 | Hypothetical protein | 153 |