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. 2007 Sep 26;45(11):3606–3615. doi: 10.1128/JCM.00348-07

TABLE 2.

Spoligotypes obtained for Beijing and non-Beijing strains, with additional MIRU and epidemiological data for non-Beijing strainsf

SIT Binary spoligotype Clade No. (%) of strains 12-Locus MIRU pattern MIT Strain Patient genderc Patient age (yr) Patient statusd Drug resistancee
19 ▪▪□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□▪▪▪▪▪▪▪□□□□▪□▪▪▪▪▪▪▪▪▪ EAI2-Manilla 5 (4.95) 22v32vvvv5vva Pb RK04 M 32 N
244326223422 729 RK05 M 38 N CPFX
254326223432 56 RK114 M 55 N
254326223432 56 RK69 M 70 N
254326223432 56 RK92 M 56 N
256 ▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□▪□▪▪▪▪□▪▪▪▪ EAI5-var 1 (0.99) 264225223533 59 RK95 M 81 N
50 ▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□▪□□□□▪▪▪▪▪▪▪ Haarlem3 3 (2.97) 325313153324 Orphan RK79 M 21 N
222324153321 698 RK57 M 88 N
222324153321 698 RK58 M 91 N
52 ▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□▪▪▪□▪▪▪ T2 2 (1.98) 242225152323 697 RK64 M 45 N
242225152323 697 RK93 M 45 N
117 ▪▪▪▪▪▪▪▪▪▪▪▪▪▪□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□▪▪▪□▪▪▪ T2-var 1 (0.99) 242225152323 697 RK104 M 57 N
Orphan ▪▪▪▪▪▪▪▪▪▪▪□□□□□□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□▪▪▪□▪▪▪ T2-var 1 (0.99) 212325153323 Orphan RK66 M 61 N
53 ▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□▪▪▪▪▪▪▪ T1 3 (2.97) 223326153311 699 RK83 F 69 N
222326153311 524 RK22 M 78 N
222326153311 524 RK77 F 90 N
2367 ▪▪▪▪▪□▪▪□□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□▪▪▪▪▪▪▪ T1-var 1 (0.99) 228325163423 415 RK21 M 60 N
172 ▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□□▪▪▪▪▪▪▪ T1-var 2 (1.98) 222326153311 524 RK96 M 52 R
223326143311 723 RK94 M 53 N
627 ▪▪▪▪□□□□▪▪▪▪□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□▪▪▪▪▪▪▪ T3-Osaka 2 (1.98) 215125113322 310 RK06 M 74 R
215125113322 310 RK09 M 87 N
2122 ▪▪▪▪□□□□▪▪▪▪□▪▪▪▪□▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□▪▪▪▪▪▪▪ T3-Osaka var 1 (0.99) 215125113322 310 RK98 M 80 N
388 ▪▪▪□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□▪▪▪▪▪▪▪▪□□□□▪▪▪▪▪▪▪ LAM9-var 2 (1.98) 222316153226 Orphan RK120 M 70 N EB
223316153226 718 RK122 F 61 N
742 ▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□□□□▪□□□□▪▪▪▪▪▪▪ Haarlem1-var 1 (0.99) 222225153323 730 RK117 M 44 N EB
Orphan ▪▪▪▪▪▪▪▪▪▪▪▪▪▪□▪□□▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□▪▪▪▪▪▪▪ X1 1 (0.99) 2423251.2322 Orphan RK74 M 73 N
Orphan ▪▪▪▪▪▪▪▪▪▪□□□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□□□▪▪▪▪▪▪ Unknown 1 (0.99) 222325153323 7 RK81 F 77 N
2041 ▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□□□□□□□□□□▪▪▪▪▪▪▪ Unknown 1 (0.99) 222325153323 7 RK55 M 65 N EB
2025 ▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□□□□□▪▪▪▪▪▪ Unknown 1 (0.99) 222325153323 7 RK25 M 77 N
1 □□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□▪▪▪▪▪▪▪▪▪ Beijing 69 (68)
190 □□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□▪▪▪▪▪□▪▪▪ Beijing-var 1 (0.99)
255 □□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□▪▪▪▪□▪▪▪▪ Beijing-var 1 (0.99)
1364 □□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□□▪▪▪□□▪▪▪▪ Beijing-var 1 (0.99)
a

v in this MIRU pattern denotes variable locus.

b

P, polyclonal infection.

c

M, male; F, female.

d

N, new patient; R, re-treated patient.

e

CPFX, ciprofloxacin; EB, ethambutol.

f

See Table 3 for specific data for Beijing and Beijing-like strains.