TABLE 3.
Eight-locus MIRU patterns obtained for Beijing and Beijing-like strains and corresponding 12-locus MIRU patterns in the updated SITVIT2 database and their worldwide distribution
| Match group | Eight-locus MIRU pattern | No. of strains | Corresponding 12-locus pattern (MIT)a | No. of strains in database | Clade (no. of strains with spoligotype) | Geographical distributionb (no. of strains) |
|---|---|---|---|---|---|---|
| A | ..12.5.73533 | 1 | 221225173533 (724) | 2 | Beijing (1) | AUS (1), JPN (1) |
| ..12.5.93533 | 1 | No pattern | None | |||
| ..13.3.83533 | 1 | No pattern | None | |||
| B | ..13.5.43533 | 1 | 221325143533 (orph) | 1 | Beijing (1) | JPN (1) |
| C | ..13.5.73433 | 2 | 221325173433 (711) | 2 | Beijing (2) | JPN (2) |
| ..13.5.73443 | 1 | No pattern | None | |||
| ..13.5.73523 | 1 | No pattern | None | |||
| D | ..13.5.73533 | 8 | 221325173533 (135) | 34 | Beijing (30) | RUS (4), SGP (1), USA (5), JPN (24) |
| E | ..13.8.73533 | 2 | 221328173533 (709) | 5 | Beijing (5) | JPN (5) |
| F | ..32.5.73533 | 4 | 223225173533 (91) | 18 | Beijing (6) | GBR (2), JPN (1), RUS (9), SGP (1), USA (3), ZAF (1) |
| G | ..32.5.83533 | 1 | 223225183533 (orph) | 1 | RUS (1) | |
| H | ..33.1.63533 | 1 | 223321563533 (orph) | 1 | Beijing-var (1) | USA (1) |
| I | ..33.5.33533 | 1 | 223325133533 (300) | 5 | Beijing (2), Beijing-var (1) | AUS (2), USA (3) |
| J | ..33.5.43533 | 1 | 223325143533 (137) | 12 | Beijing (8), Beijing-var (1), T (1) | AUS (2), NLD (1), RUS (4), USA (5) |
| K | ..33.5.53532 | 1 | 223325153532 (438) | 4 | Beijing (1) | JPN (1), RUS (1), GBR (2) |
| ..33.5.63523 | 2 | No pattern | None | |||
| L | ..33.5.63533 | 5 | 223325163533 (83) (n = 45) | 48 | Beijing (24), Beijing-var (1) | AUS (2), BEL (1), CAN (2), ESP (1), GBR (5), JPN (6), RUS (3), SGP (11), USA (14), ZAF (3) |
| 243325163533 (702) (n = 2) | ||||||
| 233325163533 (orph) (n = 1) | ||||||
| M | ..33.5.71533 | 1 | 223325171533 (orph) | 1 | GBR (1) | |
| N | ..33.5.73233 | 3 | 223325173233 (573) | 7 | Beijing (6), Beijing-var (1) | JPN (3), BEL (1), NLD (1), USA (2) |
| O | ..33.5.73333 | 1 | 223325173333 (721) (n = 4) | 5 | Beijing (3) | JPN (2), MTQ (1), GBR (1), SGP (1) |
| 223315173333 (orph) (n = 1) | ||||||
| P | ..33.5.73433 | 2 | 223325173433 (86) | 19 | Beijing (8), Beijing-var (1) | AUS (3), BGD (2), GBR (2), JPN (3), RUS (1), SGP (5), USA (3) |
| Q | ..33.5.73532 | 1 | 223325173532 (97) (n = 15) | 16 | Beijing (9), Beijing-var (1) | JPN (4), NLD (1), SGP (6), USA (5) |
| 233325173532 (orph) (n = 1) | ||||||
| R | ..33.5.73533 | 19 | 223325173533 (17) (n = 268) | 296 | Beijing (143), Beijing-var (16), Haarlem (2), T (1), undefined ST (4) | AUS (21), BEL (12), ESP (1), GBR (38), IND (2), JPN (38), NLD (2), POL (1), RUS (45), SG (40), USA (81), ZAF (15) |
| 203325173533 (214) (n = 10) | ||||||
| 213325173533 (499) (n = 3) | ||||||
| 233325173533 (570) (n = 11) | ||||||
| 223315173533 (858) (n = 2) | ||||||
| 2X3325173533 (orph) (n = 1) | ||||||
| 223325273533 (orph) (n = 1) | ||||||
| S | ..33.5.73534 | 1 | 223325173534 (706) (n = 2) | 3 | Beijing (2) | JPN (2), AUS (1) |
| 203325173534 (orph) (n = 1) | ||||||
| ..33.5.83524 | 1 | No pattern | None | |||
| T | ..33.6.73533 | 3 | 223326173533 (95) | 4 | Beijing-var (2) | USA (2), SGP (2) |
| U | ..33.6.73543 | 2 | 223326173543 (orph) | 1 | Beijing (1) | JPN (1) |
| ..34.5.72333 | 1 | No pattern | None | |||
| V | ..34.5.72533 | 1 | 223425172533 (720) | 5 | Beijing (5) | JPN (5) |
| W | ..34.5.73533 | 1 | 223425173533 (93) | 18 | Beijing (12), Beijing-var (2) | FXX (1), GBR (2), JPN (13), NLD (1), SGP (1) |
| ..33.5.7353? | 1 | No pattern | None |
a
orph, orphan; n, number of strains.
b
AUS, Australia; BEL, Belgium; BGD, Bangladesh; CAN, Canada; ESP, Spain; FXX, France; GBR, Great Britain; IND, India; JPN, Japan; MTQ, Martinique; NLA, NLD, The Netherlands; POL, Poland; RUS, Russia; SGP, Singapore; USA, United States; ZAF, South Africa.