TABLE 3.
Numbers of CDSs and orthologous clusters for individual S. pneumoniae strains
Strain name | Genome size (kb) | No. of CDSs | No. of orthologous clusters | No. of unique clusters | % Noncore clustersa |
---|---|---|---|---|---|
INV200 | 2,200 | 2,259 | 1,850 | 28 | 21.4 |
PAT6420135 | Unknown | 2,500 | 1,913 | 10 | 24 |
R6 | 2,038 | 2,274 | 1,925 | 3 | 24.5 |
D39 | 2,000 | 2,304 | 1,940 | 3 | 25 |
CGSSp18BS74 | 2,033 | 2,354 | 1,955 | 13 | 25.6 |
CGSSp3BS71 | 2,027 | 2,331 | 1,960 | 7 | 25.8 |
CGSSp11BS70 | 2,044 | 2,336 | 1,986 | 25 | 26.8 |
TIGR4 | 2,160 | 2,410 | 1,993 | 1 | 27 |
INV104B | 2,200 | 2,508 | 2,012 | 74 | 27.7 |
OXC141 | 2,200 | 2,663 | 2,014 | 67 | 27.8 |
CGSSp9BS68 | 2,090 | 2,397 | 2,021 | 37 | 28 |
CGSSp23BS72 | 2,053 | 2,411 | 2,022 | 41 | 28.1 |
CGSSp19BS75 | 2,069 | 2,432 | 2,031 | 40 | 28.4 |
CGSSp6BS73 | 2,119 | 2,434 | 2,056 | 55 | 29.3 |
CGSSp14BS69 | 2,084 | 2,763 | 2,068 | 61 | 29.7 |
23F | 2,200 | 2,428 | 2,069 | 43 | 29.7 |
TIGR670-6B | 2,100 | 2,641 | 2,157 | 68 | 32.6 |
Calculated as (total clusters in the strain − 1,454 core clusters)/(total clusters in the strain).