TABLE 1.
Oligonucleotides used for analysis by primer extension, ChIP, or EMSA
| Oligonucleotide | DNA sequence |
|---|---|
| Primer extension analysis | |
| RDS2 | GCCTTACTGGCTCGTTTTACACC |
| PCK1 | GGAAGTAGATCCTACTGTAGC |
| FBP1 | GGTATCAAACCCTTCGGTAGAGT |
| ICL1 | GCTTGTAAAGCTGCAAAATCGTTC |
| IDP2 | GCTCATCGCCGTCCATTTCCAC |
| GID8 | GCTGCAAGATCCGCTCTTCGTG |
| LSC2 | GCCCACACTTTGAAATTAGGGATA |
| MLS1 | GCTCCTTATCAACATCCACCAGT |
| PFK27 | GGAAGTCAAATATCCATCGTGAGA |
| VID24 | GTCACAGCTTTGGGTTTCTCCG |
| ChIP analysis | |
| FBP1 | CTACCAACTGAGCTAACAAGG and CTTGCGTTGGCTCTTACGCC |
| LSC2 | TCTCTCCAACTGTATGAGGAC and GGACTATCGCTCTATAGTCAC |
| MAE1 | CCTAGGCGGTTTAAATCGGAT and CGAAGCTGGACACAATATACG |
| PCK1-1 | CACTGAAGCTCCGGGTATTTT and GGAAAGGCTGTTGGTTATCTG |
| PCK1-2 | ATCGGAATATCCCACACGATC and GCCCTTTATCCGCCTATCCA |
| PDC1 | AGAACAATTTTGTGTTGTTACGG and CCCAAATCTGATTGCAAGGAG |
| EMSA | |
| PCK1-1A | TCGAACGGGTGAATGGAGATCTGG and TCGACCAGATCTCCATTCACCCGT |
| PCK1-1B | TCGAACAGGTGAATGGAGATCTGG and TCGACCAGATCTCCATTCACCTGT |
| PCK1-1C | TCGAACGGGTGAATAGAGATCTGG and TCGACCAGATCTCTATTCACCCGT |
| PCK1-2A | TCGACCGAGCTTCCTTTCATCCGG and TCGACCGGATGAAAGGAAGCTCGG |
| FBP1-2A | TCGACCGGACGGATGGAATCGCCG and TCGACGGCGATTCCATCCGTCCGG |
| FBP1-2B | TCGACCAGACGGATGGAATCGCCG and TCGACGGCGATTCCATCCGTCTGG |
| FBP1-2C | TCGACCGGACGGATAGAATCGCCG and TCGACGGCGATTCTATCCGTCCGG |
| FBP1-1A | TCGAGCGGACACCCGGAGTTATGC and TCGAGCATAACTCCGGGTGTCCGC |