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. 2007 Sep 17;27(22):7895–7905. doi: 10.1128/MCB.01055-07

TABLE 1.

Oligonucleotides used for analysis by primer extension, ChIP, or EMSA

Oligonucleotide DNA sequence
Primer extension analysis
    RDS2 GCCTTACTGGCTCGTTTTACACC
    PCK1 GGAAGTAGATCCTACTGTAGC
    FBP1 GGTATCAAACCCTTCGGTAGAGT
    ICL1 GCTTGTAAAGCTGCAAAATCGTTC
    IDP2 GCTCATCGCCGTCCATTTCCAC
    GID8 GCTGCAAGATCCGCTCTTCGTG
    LSC2 GCCCACACTTTGAAATTAGGGATA
    MLS1 GCTCCTTATCAACATCCACCAGT
    PFK27 GGAAGTCAAATATCCATCGTGAGA
    VID24 GTCACAGCTTTGGGTTTCTCCG
ChIP analysis
    FBP1 CTACCAACTGAGCTAACAAGG and CTTGCGTTGGCTCTTACGCC
    LSC2 TCTCTCCAACTGTATGAGGAC and GGACTATCGCTCTATAGTCAC
    MAE1 CCTAGGCGGTTTAAATCGGAT and CGAAGCTGGACACAATATACG
    PCK1-1 CACTGAAGCTCCGGGTATTTT and GGAAAGGCTGTTGGTTATCTG
    PCK1-2 ATCGGAATATCCCACACGATC and GCCCTTTATCCGCCTATCCA
    PDC1 AGAACAATTTTGTGTTGTTACGG and CCCAAATCTGATTGCAAGGAG
EMSA
    PCK1-1A TCGAACGGGTGAATGGAGATCTGG and TCGACCAGATCTCCATTCACCCGT
    PCK1-1B TCGAACAGGTGAATGGAGATCTGG and TCGACCAGATCTCCATTCACCTGT
    PCK1-1C TCGAACGGGTGAATAGAGATCTGG and TCGACCAGATCTCTATTCACCCGT
    PCK1-2A TCGACCGAGCTTCCTTTCATCCGG and TCGACCGGATGAAAGGAAGCTCGG
    FBP1-2A TCGACCGGACGGATGGAATCGCCG and TCGACGGCGATTCCATCCGTCCGG
    FBP1-2B TCGACCAGACGGATGGAATCGCCG and TCGACGGCGATTCCATCCGTCTGG
    FBP1-2C TCGACCGGACGGATAGAATCGCCG and TCGACGGCGATTCTATCCGTCCGG
    FBP1-1A TCGAGCGGACACCCGGAGTTATGC and TCGAGCATAACTCCGGGTGTCCGC