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. Author manuscript; available in PMC: 2009 Jan 4.
Published in final edited form as: J Mol Biol. 2007 Oct 16;375(1):202–216. doi: 10.1016/j.jmb.2007.10.017

Table 1.

Comparison of Peptide-Antibody Complexes

PDB Resolution (Å) Peptide length/residues bound Buried SA VH/VL- peptide (Å2) Buried SA VL- peptide (Å2) Buried SA VH- peptide (Å2) Buried SA L1- peptide (Å2) Buried SA L2- peptide (Å2) Buried SA L3- peptide (Å2) Buried SA H1- peptide (Å2) Buried SA H2- peptide (Å2) Buried SA H3- peptide (Å2) Surface complementarity index (Sc)
2QHR 13F6-1-2 Vλx 2.0 11/9 613 648 1176 348 0 377 133 533 706 0.78
2OTU MW1-peptide Vλx 1.68 12/11 1687 885 855 553 0 358 467 90 430 0.76
1CU4 2.9 10/9 1428 596 919 345 55 259 427 342 264 0.75
1TJG 2.0 7/6 1004 464 673 0 0 469 128 300 392 0.78
1F58 2.0 10/10 1408 725 852 438 0 364 185 205 511 0.79
1ACY 3.0 10/7 1037 498 633 251 0 333 141 222 394 0.81
1NAK 2.57 10/9 1074 553 623 225 171 230 267 0 410 0.78
1SM3 1.95 9/9 1031 444 757 160 106 235 150 95 64 0.75
1GGI 2.8 9/7 1094 560 739 126 116 292 170 59 121 0.79
1CFN 2.65 10/10 1007 501 602 166 103 251 336 57 228 0.56
1CE1 1.9 7/7 873 491 573 98 38 414 164 168 323 0.80
Average 2.3 9.5/8.5 1205 579 764 246 54 326 233 188 349 0.76
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