Table 2.
Comparison of p-values calculated by the AHOPRO program, by Monte Carlo simulations and by compound Poisson distribution formula under the M0 model
| MOTIF, CUTOFF | OCC. | AHOPRO | MONTE CARLO | POISSON | AHOPRO/MC | AHOPRO/POISSON |
| bcd, 5.3 | 3 | 0.012 | 0.012 | 0.010 | 1.00 | 1.10 |
| kr, 5.0 | 4 | 0.0044 | 0.0044 | 0.0033 | 1.01 | 1.34 |
| hb, 6.2 | 2 | 0.013 | 0.013 | 0.012 | 0.99 | 1.04 |
| bcd & kr | 3&4 | 0.00025 | 0.00026 | 3.6E-05 | 0.99 | 7.10 |
| bcd & kr & hb | 3&4&2 | 6.54E-06 | 5.8E-06 | 4.34E-07 | 1.13 | 7.13 |
Comparison of p-values calculated for the Markov(0) model by the AHOPRO program with p-values calculated by Monte Carlo simulations and by Poisson formula for motifs of D. melanogaster developmental transcription factors bicoid, kruppel and hunchback.