Table 2.
Description of database fields in ARB files exported from SILVA for Fields and entries imported from EMBL
| ARB field name | EMBL field | Description |
|---|---|---|
| acc | AC | Accession number |
| ali_xx/data | sequence | Sequence information |
| author | RA | Reference author(s) |
| clone | FT/clone | Clone from which the sequence was obtained |
| collected by | FT/collected_by | Name of the person who collected the specimen |
| collection_date | FT/collection_date | Date that the specimen was collected |
| country | FT/country | Geographical origin of sequenced sample |
| date | DT | Entry creation and update date separated by; |
| description | DE | Description |
| full_name | OS | Organism species |
| gene | FT/gene | Symbol of the gene corresponding to a sequence region |
| insdc | PR | The International Nucleotide Sequence Database Collaboration (INSDC) Project Identifier that has been assigned to the entry |
| isolate | FT/isolate | Individual isolate from which the sequence was obtained |
| isolation_source | FT/isolation_source | Describes the physical, environmental and/or local geographical source of the biological sample from which the sequence was derived |
| journal | RL | Reference location |
| lat_lon | FT/lat_lon | Geographical coordinates of the location where the specimen was collected |
| nuc_region | FT source | Identifies the biological source of the specified span of the sequence |
| nuc_rp | RP | Reference positions |
| product | FT/product | Name of the product associated with the feature |
| publication_doi | RX | Cross-reference DOI number |
| pubmed_id | RX | Cross-reference Pubmed ID |
| specific_host | FT/specific_host | Natural host from which the sequence was obtained |
| specimen_voucher | FT/specimen_Voucher | An identifier of the individual or collection of the source organism and the place where it is currently stored, usually an institution |
| start | FT rRNA | Start of the ribosomal RNA gene |
| stop | FT rRNA | Stop of the ribosomal RNA gene |
| strain | FT/strain | Strain from which the sequence was obtained |
| submit_author | RL | Submission authors from reference location |
| submit_date | RL | Submission date from reference location |
| tax_embl | OC | Organism classification according to EMBL |
| tax_embl_name | OC | Organism name taken from the classification field |
| tax_xref_embl | FT/db_xref | Database cross-reference: pointer to related information in another database |
| title | RT | Reference title |
| version | ID SV | Subversion from identification line |