Table 1.
Data coverage in the DAVID Knowledgebase.
| Gene Identifiers (> 60 millions) | Annotation Contents (> 90 millions in total) | ||
| AFFY_ID | Ontology (>40 million records) | Domain/Family (> 15 millions) | General Annotation (>21 millions) |
| ENTREZ_GENE_ID | GO_BIOLOGICAL PROCESS | BLOCKS_ID | ALIAS_GENE_SYMBOL |
| GENPEPT_ACCESSION | GO_MOLECULAR FUNCTION | COG_KOG_NAME | CHROMOSOME |
| GENBANK_ACCESSION | GO_CELLULAR COMPONENT | INTERPRO_NAME | CYTOBAND |
| GI | PANTHER_BIOLOGICAL PROCESS | PDB_ID | GENE_NAME |
| PIR_ACCESSION | PANTHER_MOLECULAR FUNCTION | PFAM_NAME | GENE_SYMBOL |
| PIR_ID | COG_KOG_ONTOLOGY | PIR_ALN | HOMOLOGOUS_GENE |
| PIR_NREF_ID | P-P Interaction (> 4 millions) | PIR_HOMOLOGY_DOMAIN | LL_SUMMARY |
| REFSEQ_GENOMIC | BIND | PIR_SUPERFAMILY_NAME | OMIM_ID |
| REFSEQ_MRNA | DIP | PRINTS_NAME | PIR_SUMMARY |
| REFSEQ_PROTEIN | MINT | PRODOM_NAME | PROTEIN_MW |
| REFSEQ_RNA | NCICB_CAPATHWAY | PROSITE_NAME | REFSEQ_PRODUCT |
| UNIGENE | TRANSFAC_ID | SCOP_ID | SEQUENCE_LENGTH |
| UNIPROT_ACCESSION | HIV_INTERACTION | SMART_NAME | SP_COMMENT |
| UNIPROT_ID | HIV_INTERACTION_CATEGORY | TIGRFAMS_NAME | Functional Category (>6.9 millions) |
| UNIREF100_ID | HPRD_INTERACTION | PANTHER_SUBFAMILY | PIR_SEQ_FEATURE |
| OFFICIAL_GENE_SYMBOL | REACTOME_INTERACTION | PANTHER_FAMILY | SP_COMMENT_TYPE |
| ESSENBLE_ID | Disease Association (~9,000) | Pathways (>50,000) | SP_PIR_KEYWORDS |
| FLYBASE_ID | GENETIC_ASSOCIATION_DB | BioCarta | UP_SEQ_FEATURE |
| HAMAP_ID | OMIM_PHENOTYPE | KEGG_PATHWAY | Gene Expression (>1.0 million) |
| HSSP_ID | Literature (>2.8 millions) | PANTHER_PATHWAY | GNF Microarray |
| TIGR_ID | GENERIF_SUMMARY | PID | UNIGENE EST |
| WORMBASE_ID | PUBMED_ID | BBID | CGAP SAGE |
| RGD_ID | HIV_INTERACTION_PUBMED_ID | KEGG_REACTION | CGAP EST |
| UNIPROT_ACCESSION | |||
Comprehensive collection and integration of different types of gene identifiers and heterogeneous annotation categories. Importantly, any of the gene identifier types and associated annotation categories above are comprehensively cross-mapped to each other in the DAVID Knowledgebase by the unique DAVID Gene Concept procedure.