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. 2008 Jan 11;4(1):e7. doi: 10.1371/journal.pcbi.0040007

Figure 2. De Novo Model.

Figure 2

Shown are the LLR and selection factor values for the 20 target k-mer sets with the highest LLR values as discovered in the de novo model. The full model is presented in Table S2. For each target k-mer set, we present its motif logo, and, when the set matches a published binding site motif, its most likely TF. Target k-mer sets are sorted according to selection factor, indicating many of the known TFs as having relatively high factor and weak selection. Also shown is the LLR of each target k-mer set, which is affected by both the number of motif appearances and their divergence properties.