Table 2. Coupled prediction of secondary and tertiary structure.

PDB code	aa	Fold type	SS1	TS1	SS2	TS2	SS3
1ail_	70	α	54	6.0	64	6.0	67
1aoy_	78	αβ	76	6.2	89	5.7	82
1bm8_	99	αβ	60	9.3	72	8.8	76
1c8cA	64	β	53	7.6	67	5.0	64
1cc5_	76	α	70	6.4	86	6.2	84
1dtdB	61	αβ	51	6.7	69	5.7	71
1fwp_	66	αβ	56	8.0	68	7.3	77
1hz6A	67	αβ	70	4.1	87	3.4	79
1isuA	62	αβ	74	7.5	89	6.9	89
1sap_	66	αβ	53	7.3	65	6.6	74
1vie_	60	β	62	8.5	68	9.0	82
1vqh_	86	β	56	11.1	71	6.8	83
1wapA	68	β	57	8.3	68	7.7	82
2ezk_	93	α	74	7.0	85	6.6	83
Average	73		62	7.4	75	6.6	78

PDB, Protein Data Bank; aa, number of amino acids; SS1, percentage of secondary structure predicted from sequence only; TS1, rmsd with 1D secondary structure prediction given in angstroms; SS2, percentage of secondary structure predicted from models; TS2, rmsd with 3D secondary structure prediction given in angstroms; SS3, percentage of secondary structure predicted from native fold.