Table 3.
Polymorphism (variant genotype or allele) |
Hardy- Weinberg Equilibrium* |
Frequency† Among Controls |
Previously Reported Frequency† Among controls‡ |
---|---|---|---|
GSTM1/GSTT1 | |||
GSTM1 (Null) | n/a | 52.2% | 53.1-53.5%[25, 32, 34] |
GSTT1 (Null) | n/a | 15.4% | 15.0-19.7% [25, 32, 34] |
Both Null | n/a | 10.3% | 10.4% [32] |
Other polymorphisms§ | |||
GSTP1I105V (V) | p=0.86 | 0.42 | 0.37[25] |
CYP2D6 (*3) | p=1.0 | 0.018 | 0.018 [33] |
CYP2E1 (*5) | p=1.0 | 0.029 | 0.038 [32] |
EPHX1Y113H (H) | p=0.84 | 0.29 | 0.32 [32] |
EPHX1H139R (R) | p=0.81 | 0.23 | 0.22 [32] |
PON1C-108T (T) | p=0.38 | 0.44 | 0.44-0.62 [28, 29] |
PON1Q192R (R) | p=0.56 | 0.33 | 0.24-0.38 [28, 29] |
PON1L55M (M) | p=0.25 | 0.34 | 0.28-0.46 [28, 29] |
PON2S311C (C) | p=0.42 | 0.31 | 0.20-0.25 [28, 29] |
Significant disequilibrium indicated by p<0.05, exact chi square
Genotype frequency (GSTM1 and GSTT1 null) or variant allele frequency (all other polymorphisms)
Healthy white individuals/control subjects; when available [32], includes genotype/allele frequencies from International Project on Genetic Susceptibility to Environmental Carcinogens (GSEC) database containing information on 12,525 white individuals without cancer
Single nucleotide polymorphisms determined by individual TaqMan assays
Abbreviations: n/a=not applicable; GST=glutathione S-transferase; CYP=cytochrome P450; EPHX=microsomal epoxide hydrolase; PON=paraoxonase