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. Author manuscript; available in PMC: 2008 Jan 10.
Published in final edited form as: Gastroenterology. 2006 Oct 21;132(1):119–126. doi: 10.1053/j.gastro.2006.10.034

Table 3.

Relationship between the number and type of mutations reported for each gene and the number of regions that consistently failed to generate signals (“no calls”).

Type of mutation Number of mutations Number of mutations in “no call” regions
Single nucleotide changes
 Missense/nonsense 200 6
 Single nucleotide polymorphism 119 4
 Splicing 41 1
Total number of mutations 360 11*
Insertion and deletion**
 Insertion 50 1 (?)
 Insertion/deletion 5 0
 Small deletion 86 4 (?)
 Large deletion (>20 nucleotides) 6 0
 Duplication 2 0
*

6 mutations in SERPINA1, 4 mutations in JAG1, and 1 mutation in ABCB11

**

The resequencing technology may not reliably identify insertion, deletion, or duplication. Although most of these mutations reside in regions of the gene fully sequenced by the chip, the ability to identify these mutations requires further validation.