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. 2003 Oct;133(2):618–629. doi: 10.1104/pp.103.025320

Table I.

Primers used for the isolation of the promoter region and the 3′ end of the copper chaperone for a Cu/Zn Sodp (StCCS) gene and for the determination of the TIS

The first part of the table indicates the primers used in the three genome walks to isolate the promoter region of StCCS. AP1 stands for primary and AP2 for nested adaptor-related primer, GSP with odd numbers for primary gene-specific primer, and GSP with even numbers for nested gene-specific primer. In the second part of the table, the primers used in the GeneRacer kit to isolate the StCCS TIS and the 3′ region are depicted. GR3′/5′ stands for primary adaptor-related primers, GR3′/5′N for nested adaptor-related primers, GSP with odd numbers for primary gene-specific primer, and GSP with even numbers for nested gene-specific primer.

Experiment Primer Name Primer Sequence (5′→3′)
Walk No.
    1, 2, and 3 AP1 GTAATACGACTCACTATAGGGC
    1, 2, and 3 AP2 ACTATAGGGCACGCGTGGT
    1 GSP1 AATATCTGGTCCTTTGAATTCGGCAAC
    1 GSP2 GCAGCAGATATAAGGAAATCTTCGGGT
    2 GSP3 CCCCCAAACTAAACCTTCAATAACCAA
    2 GSP4 AAATGGGCTACATTAAGCCATCAAGAT
    3 GSP5 CGGAGGAAGTTTGGTGATTGGAAGAAG
    3 GSP6 CGATGGACGTTCAAACTGCGAAGAAGA
Isolation of 3″ or TIS
    3′ and TIS GR5′ CGACTGGAGCACGAGGACACTGA
    3′ and TIS GR5′N GGACACTGACATGGACTGAAGGAGTA
    3′ and TIS GR3 GCTGTCAACGATACGCTACGTAACG
    3′ and TIS GR3′N CGCTACGTAACGGCATGACAGTG
    TIS GSP7 GAAGGCGTTTCCATATGAAGAGCTGAA
    TIS GSP8 GAAGCAGCAAAAGCAGCAGCTGGAATA
    3′ GSP9 AGCCCGTTTGATTGGACAAGGAGTACC
    3′ GSP10 TATCTGCTGCTGTTGCCGAATTCAAAG