Table III.
Known Genes Turned Off During Cycle (Quiescent), Conserved through Cycle (Stem Cell Specific), or Turned On at 48 h of Culture (Cycling Genes)
| ID no. | GenBank match | Access no. | Size | LRH* | LRH48** |
|---|---|---|---|---|---|
| Quiescent genes | |||||
| 2626 | Human TBP-associated factor 170 | AJ001017 | 186 | 6 | 0 |
| 2606 | Mouse antigen peptide transporter 1 | AF027865 | 331 | 6 | 0 |
| 2683 | Mouse aspartate aminotransferase | X07309 | 130 | 6 | 0 |
| 2687 | Mouse A-X actin | J04181 | 149 | 6 | 0 |
| 2742 | Mouse bullous pemphigoid antigen 1-b (Bpag1) | AF396879 | 344 | 6 | 0 |
| 2597 | Mouse elongation factor 1-alpha | X13661 | 118 | 6 | 0 |
| 2634 | Mouse inositol 1,4,5-trisphosphate receptor | Z71173 | 234 | 6 | 0 |
| 2604 | Mouse PSMB5 | AB003306 | 265 | 6 | 0 |
| 2663 | Mouse spermophilus tridecemlineatus 26s proteasome | U36395 | 391 | 6 | 0 |
| 2717 | Mouse translation initiation factor 4E | M61731 | 162 | 6 | 0 |
| 2718 | Human splicing factor, arginine/serine-rich 7 (SFRS7) | L41887 | 178 | 6 | 2 |
| 2681 | Mouse putative E1-E2 ATPase | AF011336 | 470 | 6 | 2 |
| 2648 | Human memd | U31000 | 350 | 4 | 0 |
| 2602 | Human splicing factor Sip1 | AF030234 | 249 | 4 | 0 |
| 2654 | Mouse 84 kD heat shock protein | M18186 | 350 | 4 | 0 |
| 2698 | Mouse cholesterol 7-a-hydroxylase exon 1 | Z18860 | 174 | 4 | 0 |
| 2588 | Mouse GU protein | AA272436 | 253 | 4 | 0 |
| 2689 | Mouse heat shock protein 70 cognate | U27129 | 196 | 4 | 0 |
| 2585 | Mouse inositol 1,4,5-triphosphate receptor 5 | Z33908 | 237 | 4 | 0 |
| 2771 | Mouse interleukin-5 | X06271 | 292 | 4 | 0 |
| 2600 | Mouse mitochondrial 12S ribosomal RNA | X84382 | 210 | 4 | 0 |
| 2772 | Mouse mitochondrial genome | V00711 | 77 | 4 | 0 |
| 2719 | Mouse pim-1 proto-oncogene | M13945 | 192 | 4 | 0 |
| 2624 | Mouse protein synthesis elongation factor Tu | M22432 | 364 | 4 | 0 |
| 2799 | Mouse retinoblastoma binding protein 2 | AC018559 | 153 | 4 | 0 |
| 2615 | Mouse ribosomal protein S12 | X15962 | 142 | 4 | 0 |
| 2806 | Mouse signal recognition particle receptor beta subunit | AA419748 | 220 | 4 | 0 |
| 2647 | Mouse T cell receptor gamma locus (gamma 2 and 4 gene clusters) | AF021335 | 267 | 4 | 0 |
| 2761 | Rat androgen-binding protein | M19993 | 272 | 4 | 0 |
| Common genes | |||||
| 2677 | Mouse Ercc-4 DNA repair gene | AC004155 | 365 | 6 | 4 |
| 2805 | Human ribosomal protein L18A | L05093 | 41 | 6 | 4 |
| 2594 | Mouse TIE receptor tyrosine kinase | X73960 | 364 | 6 | 4 |
| 2571 | Mouse ribosomal protein S20 | X51537 | 150 | 6 | 4 |
| 2573 | Mouse jerky mRNA | U35730 | 164 | 8 | 8 |
| 2633 | Mouse casein kinase II, beta subunit | X80685 | 189 | 6 | 6 |
| 2744 | Human CD9 | L08115 | 156 | 6 | 6 |
| 2595 | Mouse protein synthesis elongation factor Tu | M22432 | 375 | 6 | 6 |
| 2608 | Mouse antigen peptide transporter 1 | AF027865 | 372 | 6 | 6 |
| 2582 | Rat matrin cyclophilin | AF043642 | 203 | 4 | 4 |
| 2569 | Mouse ribosomal protein S12 | X15962 | 146 | 4 | 4 |
| 2727 | Rat 3-hydroxyiso- butyrate | J04628 | 270 | 4 | 6 |
| 2671 | Mouse heat shock protein 70 cognate | M19141 | 587 | 4 | 6 |
| Cycling genes | |||||
| 2674 | Mouse excision repair cross-complementing rodent repair deficiency, complementation group 2 | L47235 | 223 | 0 | 4 |
| 2631 | SWI/SNF related transcription termination factor, RNA polymerase II | AA311008 | 275 | 0 | 4 |
| 2568 | Rat matrin cyclophilin | AF043642 | 149 | 0 | 4 |
| 2575 | CCR4-NOT transcription complex, subunit 7 | AA816074 | 198 | 0 | 4 |
| 2705 | Mouse G-utrophin | X83506 | 450 | 0 | 4 |
| 2711 | Human HS1 heamatopoietic protein | X16663 | 123 | 0 | 4 |
| 2596 | Myeloid cell-specific leucine-rich glycoprotein (CD14) | AC087795 | 390 | 2 | 8 |
| 2644 | Mouse transcription elongation factor S-II-T1 | D86081 | 206 | 0 | 6 |
| 2696 | Mouse beta-1,4-galactosyltransferase | D37791 | 136 | 0 | 6 |
| 2572 | Mouse MAP1 | AA396150 | 156 | 0 | 6 |
| 2743 | Mouse cell division control protein 19 | D86725 | 363 | 0 | 6 |
| 2750 | Rat basement membrane-associated chondroitin proteoglycan Bamacan | U82626 | 272 | 0 | 6 |
| 2754 | H2A Histone family, member Y | C75971 | 304 | 2 | 8 |
| 2592 | MUS81 endonuclease | AA014278 | 280 | 0 | 8 |
Relative expression in LRH cells* or LRH48 cells**.