TABLE 1.
Oligonucleotide primers used in this study
Primer | Nucleotide sequence (5′ to 3′)a | Location | Application | Amplicon |
---|---|---|---|---|
SSP-917B | AAC TGT ACC ACT AAT AAC TCA CAA T | Tn917-lac | PCR | |
PBSSK3 | GTA AAA CGA CGG CCA GT | pBluescript | PCR | |
Spec1 | CGA CGC GTC GAA ATC TAT AAA TAA ACT A | pSF152 | Mutagenesis | Spectinomycin cassette |
Spec2 | CGG TCG ACC GAA ATA ATA AAA CAA AAA A | pSF152 | Mutagenesis | Spectinomycin cassette |
Fru repressor5′ | CGA CGC GTC GGG TAC TAC AAA TGA GTT G | fruR | RT-PCR | fruR-fruI (3,330 bp) |
FruPTS3′ | CGA CGC GTC GTT ATT YTG ACA ATG GTT T | fruI | RT-PCR | fruR-fruI (3,330 bp) |
FruR1 | CGG GTA CCC GTC AAT ATC AAC TAC TGA AT | Hypothetical protein 1 | Mutagenesis of fruR, RT-PCR | fruR 5′ flanking region (907 bp) |
FruR2 | CGA CGC GTC GTA TGA ACC AAA CTA TCT A | fruR | Mutagenesis of fruR, RT-PCR | fruR 5′ flanking region (907 bp) |
FruR3 | CGG TCG ACC GTG TTA AAG TAG CTC CTC T | fruR | Mutagenesis of fruR | fruR 3′ flanking region (740 bp) |
FruR4 | CGC TCG AGC GTA AGA TTT GAC GAG CAT A | fruK | Mutagenesis of fruR | fruR 3′ flanking region (740 bp) |
FruK1 | CGG GTA CCC GAC AGG AGT AAA AAC AGA G | fruR | Mutagenesis of fruK | fruK 5′ flanking region (1,022 bp) |
FruK2 | CGA CGC GTC GGG TTT AAC GTT ACA GTA T | fruK | Mutagenesis of fruK | fruK 5′ flanking region (1,022 bp) |
FruK3 | CGG TCG ACC GTA TTA AAG AAA CAT ATG A | fruK | Mutagenesis of fruK | fruK 3′ flanking region (834 bp) |
FruK4 | CGC TCG AGC GTC AGT TCT TCT GTC TTA C | fruI | Mutagenesis of fruK | fruK 3′ flanking region (834 bp) |
PTS1 | CGG GTA CCC GTT GCT AAG GCA AAG ATA A | fruK | Mutagenesis of fruI | fruI 5′ flanking region (1,053 bp) |
PTS2 | CGA CGC GTC GCT AGC AAC ATA ACG TCT T | fruI | Mutagenesis of fruI | fruI 5′ flanking region (1,053 bp) |
PTS3 | CGG TCG ACC GTT TGG TTG GTG CAG TAG T | fruI | Mutagenesis of fruI | fruI 3′ flanking region (613 bp) |
PTS4 | CGC TCG AGC GCA TTT AGA ACT CCA AAT TAA | Hypothetical protein 2 | Mutagenesis of fruI | frul 3′ flanking region (613 bp) |
Hypo2rev | ATT CGA CCT TGA ATA TGG TTA ACT TGA G | Hypothetical protein 2 | RT-PCR | |
Hypo3rev | CTC CAA GAT GTG TTC CAA TAA CAC TAC C | Hypothetical protein 3 | RT-PCR |
Engineered restriction sites are indicated by boldface type. The restriction endonuclease recognition sequences are as follows: KpnI, GGT/ACC; MluI, ACG/CGT; SalI, GTC/GAC; and XhoI, CTC/GAG.