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. 2003 Nov;185(21):6241–6254. doi: 10.1128/JB.185.21.6241-6254.2003

TABLE 1.

Oligonucleotide primers used in this study

Primer Nucleotide sequence (5′ to 3′)a Location Application Amplicon
SSP-917B AAC TGT ACC ACT AAT AAC TCA CAA T Tn917-lac PCR
PBSSK3 GTA AAA CGA CGG CCA GT pBluescript PCR
Spec1 CGA CGC GTC GAA ATC TAT AAA TAA ACT A pSF152 Mutagenesis Spectinomycin cassette
Spec2 CGG TCG ACC GAA ATA ATA AAA CAA AAA A pSF152 Mutagenesis Spectinomycin cassette
Fru repressor5′ CGA CGC GTC GGG TAC TAC AAA TGA GTT G fruR RT-PCR fruR-fruI (3,330 bp)
FruPTS3′ CGA CGC GTC GTT ATT YTG ACA ATG GTT T fruI RT-PCR fruR-fruI (3,330 bp)
FruR1 CGG GTA CCC GTC AAT ATC AAC TAC TGA AT Hypothetical protein 1 Mutagenesis of fruR, RT-PCR fruR 5′ flanking region (907 bp)
FruR2 CGA CGC GTC GTA TGA ACC AAA CTA TCT A fruR Mutagenesis of fruR, RT-PCR fruR 5′ flanking region (907 bp)
FruR3 CGG TCG ACC GTG TTA AAG TAG CTC CTC T fruR Mutagenesis of fruR fruR 3′ flanking region (740 bp)
FruR4 CGC TCG AGC GTA AGA TTT GAC GAG CAT A fruK Mutagenesis of fruR fruR 3′ flanking region (740 bp)
FruK1 CGG GTA CCC GAC AGG AGT AAA AAC AGA G fruR Mutagenesis of fruK fruK 5′ flanking region (1,022 bp)
FruK2 CGA CGC GTC GGG TTT AAC GTT ACA GTA T fruK Mutagenesis of fruK fruK 5′ flanking region (1,022 bp)
FruK3 CGG TCG ACC GTA TTA AAG AAA CAT ATG A fruK Mutagenesis of fruK fruK 3′ flanking region (834 bp)
FruK4 CGC TCG AGC GTC AGT TCT TCT GTC TTA C fruI Mutagenesis of fruK fruK 3′ flanking region (834 bp)
PTS1 CGG GTA CCC GTT GCT AAG GCA AAG ATA A fruK Mutagenesis of fruI fruI 5′ flanking region (1,053 bp)
PTS2 CGA CGC GTC GCT AGC AAC ATA ACG TCT T fruI Mutagenesis of fruI fruI 5′ flanking region (1,053 bp)
PTS3 CGG TCG ACC GTT TGG TTG GTG CAG TAG T fruI Mutagenesis of fruI fruI 3′ flanking region (613 bp)
PTS4 CGC TCG AGC GCA TTT AGA ACT CCA AAT TAA Hypothetical protein 2 Mutagenesis of fruI frul 3′ flanking region (613 bp)
Hypo2rev ATT CGA CCT TGA ATA TGG TTA ACT TGA G Hypothetical protein 2 RT-PCR
Hypo3rev CTC CAA GAT GTG TTC CAA TAA CAC TAC C Hypothetical protein 3 RT-PCR
a

Engineered restriction sites are indicated by boldface type. The restriction endonuclease recognition sequences are as follows: KpnI, GGT/ACC; MluI, ACG/CGT; SalI, GTC/GAC; and XhoI, CTC/GAG.