. Author manuscript; available in PMC: 2009 Jan 5.

Published in final edited form as: Virology. 2007 Oct 24;370(1):130–141. doi: 10.1016/j.virol.2007.08.022

TABLE 1.

Peptide sequences in the cocktail vaccine and conservation of primary amino acid sequence among various HIV-1 clades

Peptide	Amino acid Sequence	Conservation among HIV-1 Clades (A-O)
62 (gp41)	⁵⁸⁶YLRDQQLLGIWG⁵⁹⁷	84-100%
64 (gp41)	⁵¹⁹FLGFLGAAGSTMGAASLTLTVQARQ⁵⁴³	80-100%
J44 (gp41)	⁵⁴⁹RQQQNNLLRAIEA⁵⁶¹	77-92%
104 (gp120)	⁴⁵VYYGVPVWKEA⁵⁵	99-100%
111 (gp120)	¹¹⁸LWDQSLKPCVKLT¹³⁰	93-100%
113 (gp120)	²⁰⁴SVITQACSKVSFE²¹⁶	92-100%
116 (gp120)	²⁴⁰GTGPCTNVSTVQC²⁵²	92-100%
J47 (gp120)	⁴⁸⁶YKVVKIEPL⁴⁹⁴	78-100%