Table 2.
rs# | Positiona | Tagged SNP | LDBLOCK | MA | MAF Young | MAF Adult | HWE-pval | %Geno | ||
1 | 5'UTR | rs7797223 | 136198443 | T | 0.25 | 0.26 | 0.77 | 95.6 | ||
2 | rs6957496 | 136202377 | 1 | G | 0.09 | 0.11 | 0.02 | 96.6 | ||
3 | intron 3 | rs12533282 | 136207518 | 1, 4, 5, | 1(1 kb) | G | 0.18 | 0.17 | 0.40 | 98.6 |
4 | rs10488595 | 136208970 | A | 0.18 | 0.17 | 0.71 | 97.7 | |||
5 | rs10488596 | 136209134 | T | 0.18 | 0.16 | 0.37 | 97.2 | |||
6 | rs1424569 | 136211219 | A | 0.44 | 0.47 | 0.02 | 94.8 | |||
7 | rs17415326 | 136214872 | C | 0.02 | 0.05 | 0.48 | 95.1 | |||
8 | rs1424548 | 136219956 | T | 0.37 | 0.36 | 0.53 | 98.2 | |||
9 | rs4475425 | 136225739 | 2 (5 Kb) | A | 0.21 | 0.24 | 0.87 | 94.8 | ||
10 | rs1364405 | 136231025 | 41 | A | 0.35 | 0.33 | 0.08 | 97.9 | ||
11 | rs1364402 | 136234903 | 3 (17 kb) | C | 0.12 | 0.11 | 1.00 | 98.7 | ||
12 | rs2350780 | 136243509 | G | 0.40 | 0.39 | 0.59 | 98.8 | |||
13 | rs7810473 | 136246997 | G | 0.42 | 0.42 | 0.30 | 98.9 | |||
14 | rs1364404 | 136248827 | T | 0.31 | 0.32 | 0.62 | 98.1 | |||
15 | rs1469179 | 136251497 | 22 | A | 0.44 | 0.46 | 0.18 | 97.3 | ||
16 | rs17496259 | 136251883 | A | 0.31 | 0.31 | 0.48 | 95.8 | |||
17 | rs17411478 | 136251909 | T | 0.31 | 0.32 | 0.37 | 99.1 | |||
18 | rs10488600 | 136255998 | T | 0.10 | 0.13 | 0.00 | 98.0 | |||
19 | rs17494589 | 136256129 | 26 | A | 0.20 | 0.18 | 0.07 | 94.9 | ||
20 | rs17168817 | 136258808 | T | 0.08 | 0.06 | 0.87 | 99.2 | |||
21 | rs1364409 | 136262573 | 4 (12 kb) | T | 0.32 | 0.35 | 0.13 | 96.4 | ||
22 | rs6947206 | 136265651 | C | 0.46 | 0.48 | 0.12 | 94.0 | |||
23 | rs7782965 | 136274673 | 21, 26, 27 | T | 0.32 | 0.35 | 0.45 | 90.4 | ||
24 | rs17494540 | 136277380 | C | 0.20 | 0.18 | 0.01 | 96.3 | |||
25 | rs1424387 | 136282543 | C | 0.31 | 0.31 | 0.39 | 99.0 | |||
26 | rs1378646 | 136285541 | 5 (2 kb) | G | 0.35 | 0.37 | 0.32 | 98.8 | ||
27 | intron 4 | rs1158586 | 136287676 | G | 0.34 | 0.40 | 0.42 | 93.0 | ||
28 | rs324582 | 136301147 | G | 0.07 | 0.10 | 0.02 | 96.4 | |||
29 | rs2061174 | 136311940 | 30 | 6 (10 kb) | G | 0.34 | 0.35 | 0.93 | 84.6 | |
30 | rs7799047 | 136322098 | G | 0.34 | 0.35 | 1.00 | 93.5 | |||
31 | intron 5 | rs17411561 | 136332728 | 14, 16, 17, 25 | C | 0.32 | 0.25 | 0.25 | 87.7 | |
32 | rs420817 | 136337943 | 7 (11 kb) | C | 0.48 | 0.47 | 0.21 | 95.7 | ||
33 | rs324640 | 136339536 | 32 | G | 0.46 | 0.50 | 0.17 | 86.2 | ||
34 | rs10488602 | 136341043 | C | 0.22 | 0.23 | 0.43 | 98.1 | |||
35 | rs324647 | 136343292 | C | 0.14 | 0.15 | 0.13 | 95.9 | |||
36 | rs324650 | 136344201 | T | 0.47 | 0.48 | 0.08 | 85.2 | |||
37 | rs324651 | 136349801 | 35 | T | 0.14 | 0.14 | 0.13 | 93.1 | ||
38 | 3'UTR | rs8191992 | 136351848 | 8 (0.2 kb) | T | 0.45 | 0.48 | 0.60 | 96.5 | |
39 | rs8191993 | 136352103 | G | 0.35 | 0.35 | 0.93 | 94.9 | |||
40 | rs7780181 | 136357075 | G | 0.42 | 0.44 | 0.83 | 98.7 | |||
41 | rs1424543 | 136360300 | C | 0.36 | 0.32 | 0.01 | 95.4 | |||
42 | rs11971309 | 136362695 | 8 | T | 0.38 | 0.37 | 0.57 | 90.0 | ||
43 | rs11773032 | 136391582 | A | 0.00 | 0.01 | 1.00 | 98.1 |
a Chromosomal single nucleotide position (SNP) position based on Build 36.1. Tag-SNPs are depicted in bold. Abbreviations: LD, Linkage disequilibrium; MA, Minor Allele, MAF Minor Allele Frequency; HWE, Hardy-Weinberg Equilibrium