Probes used and cut-offs.
| Sequence | Gene | Probe ID | Norm cut-off | Control value | Raw cut-offa | Assignment |
|---|---|---|---|---|---|---|
| 1 | FGFR3 | 204379_s_at | 500 | 22.43 | 11,215 | 4p16 |
| 2 | WHSC1 | 223472_at | 7.0 | 108.4 | 759 | 4p16 |
| 3 | CCND3 | 201700_at | 7 | 1380 | 9660 | 6p21 |
| 4 | ITGB7 | 205718_at | 8 | 2162 | 17,296 | Maf |
| 5 | MAF | 209348_at | 15 | 375.5 | 5633 | Maf |
| 6 | MAFB | 218559_s_at | 100 | 112.2 | 11,220 | Maf |
| 7 | CX3CR1 | 205898_at | 10 | 223.1 | 2231 | Maf |
| 8 | CCND1 | 208711_s_at | 10 | 619.1 | 6191 | 11q13 |
| 9 | CCND1 | 208712_at | 0.59 (mean + 2 SD of NPC) | 787.4 | 465 | D1 and D1+D2 |
| 10 | CCND2 | 200953_s_at | 1.95 (mean + 2 SD of NPC) | 1640 | 3198 | D2 and D1+D2 |
a
Raw cut-off = control value for GSM 51111(median chip value for all samples of 196.9) multiplied by norm cut-off value.