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. 2007 Sep 17;111(1):122–131. doi: 10.1182/blood-2007-04-084186

Table 1.

Primers and conditions used for RT-PCR

Gene Primers Amplified product, bp Cycles Ta, °C
ACTIN S: 5′-atctggcaccacaccttctacaatgagctgcg-3′; AS: 5′-cgtcatactcctgcttgctgatccacatctgc-3′ 838 40 63
OCT4 S: 5′-gggaaggtattcagccaaacg-3′; AS: 5′-ggttcgctttctctttcggg-3′ 180 20 56
BRACHYURY S: 5′-cccgcgcactacacacccctcacc-3′; AS: 5′-ccttgggctgcggcgtcgtactg-3′ 125 40 63
SCL S: 5′-atggtgcagctgagtcctcc-3′; AS: 5′-tctcattcttgctgagcttc-3′ 331 40 63
RUNX1B S: 5′-cgtgcacatacattagtagcactacctttg-3′; AS: 5′-cttccacgaatcttgcttgcagaggttaag-3′ 304 40 63
RUNX1C S: 5′-gaagtctgaacccagcatagtggtcagcag-3′; AS: 5′-gtggacgtctctagaaggattcattccaag-3′ 231 40 63
GATA-2 S: 5′-agccggcacctgttgtgcaa-3′; AS: 5′-tgacttctcctgcatgcact-3′ 244 30 58
LMO2 S: 5′-ggatcctgccggagagactatctc-3′; AS: 5′-gaattcagtgaacacctccgcaaa-3′ 289 40 63
C-MYB S: 5′-ctcagacttggaaatgccttc-3′; AS: 5′-ccagtggtgtgagcagaaga-3′ 406 40 63
VE-CADHERIN S: 5′-accggatgaccaagtacagc-3′; AS: 5′-acacactttgggctggtagg-3′ 596 40 63
FRIZZLED-3 S: 5′-ccttggcctgaagatatgg-3′; AS: 5′-acaaggaggtgaacaactacg-3′ 210 40 56
FRIZZLED-4 S: 5′-ccaacatggctgttgaaatg-3′; AS: 5′-tcacccaaccatttcctctc-3′ 168 40 56
FRIZZLED-5 S: 5′-tgctaccagccgtccttcagt-3′; AS: 5′-ccatgccgaagaagtagaccag-3′ 319 40 56
WNT3A S: 5′-ttcttactcctctgcagcctg-3′; AS: 5′-ctggatgccaatcttgatgc-3′ 207 40 56
WNT5 S: 5′-cttcgcccaggttgtaattgaagc-3′; AS: 5′-ctgccaaaaacagaggtgttatcc-3′ 273 40 56
WNT10B S: 5′-aatgcgaatccacaacaac-3′; AS: 5′-gggtctcgctcacagaagtc-3′ 288 40 56
GAPDH S: 5′-gtcttctccaccatggagaaggct-3′; AS: 5′-catgccagtgagcttcccgttca-3′ 277 40 50-63
CYCLIN-D1 S: 5′-gcggaggagaacaaacagat-3′; AS: 5′-tgtgaggcggtaggaca-3′ 180 40 56

S indicates forward; and AS, reverse.