Table 2.
Brachyury-like (Primitive Streak) gene list (Pearson correlation >0.9 with brachyury)
| Description | Symbol | Corr. | Synonyms | Genbank ID | Expression/Function |
| Brachyury (T) | T | 1.00 | cou;Low;Lr;;T1 | NM_009309.1 | [33, 136] Primitive streak |
| Eomesodermin * | Eomes | 0.98 | Tbr2 | NM_010136.1 | [33] Primitive streak |
| Fibroblast growth factor 8 | Fgf8 | 0.97 | Aigf;Fgf-8 | NM_010205.1 | [137] primitive streak expression |
| Mix1 | Mixl1 | 0.97 | Mm1;Mml | NM_013729.2 | [30] KO primitive streak abnormal |
| Lysophospholipase isoform 1 | A530050D06Rik | 0.97 | XM_203596 | ||
| LIM homeobox protein 1 * | Lhx1 | 0.96 | Lim1; Lhx1 | NM_008498 | [31] Primitive streak expression |
| Mesoderm posterior 1 | Mesp1 | 0.95 | NM_008588.1 | [138] nascent mesodermal cells | |
| Sp5 | Sp5 | 0.94 | NM_022435.2 | [32] Primitive streak expression | |
| 8430415E04Rik * | 8430415E04Rik | 0.94 | unknown | NM_028980.1 | |
| Axin2 | Axin2 | 0.94 | Axi1;Axil;Conductin | NM_015732.3 | [139] Wnt signalling inhibitor |
| Ninein | Nin | 0.93 | mKIAA1565 | NM_008697 | [140] Centrosome anchoring |
| E330009J07Rik | E330009J07Rik | 0.93 | mKIAA1147 | NM_175528 | |
| Proteosome subunit, beta 8 * | Psmb8 | 0.93 | Lmp-7;Lmp7 | NM_010724.1 | [141] reduced MHC class I |
| Solute carrier family 30 member 3 | Slc30a3 | 0.93 | Znt3 | NM_011773 | [142] KO no phenotype |
| DHHC-type Zn-finger containing protein | 2400007G07Rik | 0.92 | AK010296 | ||
| Chemokine (C-C motif) ligand 20 | Ccl20 | 0.92 | NM_016960 | [143] T and B cell regulation | |
| Protease 28 subunit, beta * | Psme2b | 0.92 | PA28b-p;Psme2-like | NM_011191.1 | [144] MHC Class I regulation |
| D130029J02Rik | D130029J02Rik | 0.92 | XM_150103 | ||
| F-box and leucine-rich repeat protein 14 | Fbxl14 | 0.92 | Fbx14l | NM_133940 | |
| WD repeat & FYVE domain containing 1 | Wdfy1 | 0.92 | FENS-1;Jr1;WDF1 | NM_027057 | [145] Endosome and Golgi regulation |
| ADP-ribosylation factor-like 6 int. protein 2 | Arl6ip2 | 0.92 | Aip-2;AV334690 | NM_019717.1 | |
| Protease 28 subunit, alpha | Psme1 | 0.92 | PA28a | NM_011189.1 | [146] Proteasome activator MHC Class I |
| TAF10 | Taf10 | 0.92 | 30 kDa;Taf2h;TAFII30 | NM_020024.3 | [147] KO ICM phenotype |
| Helicase with zinc finger domain | Helz | 0.91 | NM_198298 | [148] Primitive streak expression | |
| Transmembrane 4 superfamily member 10 | Tm4sf10 | 0.91 | BCMP1 | NM_175771.2 | |
| 1190004M23Rik | 1190004M23Rik | 0.90 | |||
| Carbonic anhydrase 14 | Car14 | 0.90 | NM_011797.1 | [149] KO no phenotype | |
| Male enhanced antigen 1 | Mea1 | 0.90 | Mea-1 | NM_010787.1 | [150] Testis development |
| Delta-like 3, transcript variant 1 | Dll3 | 0.90 | pu;pudgy | NM_007866.1 | [151] primitive streak expression |
| Ring finger protein 30 | Rnf30 | 0.90 | MURF;MURF-3 | NM_021447.1 | [152] Myogenic regulator |
* More than one independent illumina probe for these genes were identified