Table 1.
Top 100 genes identified in Duroc
| ID | Name | gene_id | M | adj.P.Val |
| 211570 | Similar to hypothetical protein (LOC475155) | XM_532385.1 | 0.746 | 4.28e-12 |
| 103463 | Cytochrome P450 17A1 (CYP17A1) | NM_214428.1 | 1.227 | 6.05e-12 |
| 218005 | 1.100 | 8.28e-12 | ||
| 217877 | Ferritin, light polypeptide (FTL) | NM_000146.3 | 1.033 | 1.27e-11 |
| 209883 | 0.550 | 1.29e-11 | ||
| 213434 | Eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) | NM_001402.4 | 1.084 | 1.29e-11 |
| 203529 | Cystatin F (leukocystatin) (CST7) | NM_003650.2 | 0.726 | 1.57e-11 |
| 102025 | Cytochrome b-5 (CYB5) | NM_001001770.1 | 0.529 | 1.57e-11 |
| 210231 | Ferritin, light polypeptide (FTL) | NM_000146.3 | 1.032 | 1.57e-11 |
| 215500 | Ferritin, light polypeptide (FTL) | NM_000146.3 | 0.986 | 5.24e-11 |
| 210851 | Ferritin, light polypeptide (FTL) | NM_000146.3 | 1.006 | 6.23e-11 |
| 216813 | Kallikrein 6 (neurosin, zyme) (KLK6), transcript variant C | NM_001012965.1 | 0.892 | 6.45e-11 |
| 211448 | Golgi phosphoprotein 3-like (GOLPH3L) | NM_018178.3 | 0.927 | 1.55e-10 |
| 103177 | Cytochrome b-5 (CYB5) | NM_001001770.1 | 0.768 | 9.43e-10 |
| 216525 | Chromosome 22 open reading frame 16 (C22orf16) | NM_213720.1 | 0.639 | 1.52e-09 |
| 214052 | Carbonyl reductase/NADP-retinol dehydrogenase (DHRS4) | NM_214019.1 | 0.889 | 1.64e-09 |
| 218092 | Procollagen C-endopeptidase enhancer (PCOLCE) | NM_002593.2 | 0.606 | 1.69e-09 |
| 100650 | Brain expressed, X-linked 1 (BEX1) | NM_018476.2 | 0.537 | 1.98e-09 |
| 216417 | DNA helicase HEL308 (HEL308) | NM_133636.1 | 0.757 | 2.11e-09 |
| 217089 | Chromosome 20 open reading frame 22 (C20orf22) | NM_015600.2 | 0.812 | 2.19e-09 |
| 211821 | Phosphatidylserine receptor (PTDSR) | NM_015167.1 | 0.891 | 2.61e-09 |
| 213358 | Microtubule-associated protein 1 light chain 3 alpha (MAP1LC3A) | NM_032514.2 | 0.811 | 3.78e-09 |
| 206784 | Ferritin heavy-chain (FTH1) | NM_213975.1 | 0.478 | 4.72e-09 |
| 216513 | Prostate androgen-regulated transcript 1 (PART1) | NM_016590.2 | 0.693 | 4.72e-09 |
| 101322 | Ferredoxin (FDX1) | NM_214065.1 | 0.498 | 8.99e-09 |
| 215969 | N-acetylglucosamine-1-phosphotransferase, gamma subunit (GNPTG) | NM_032520.3 | 0.517 | 1.67e-08 |
| 211898 | POU domain, class 3, transcription factor 2 (POU3F2) | NM_005604.2 | 0.643 | 3.56e-08 |
| 209731 | Ferritin heavy-chain (FTH1) | NM_213975.1 | 0.595 | 3.56e-08 |
| 214602 | Acetyl-Coenzyme A carboxylase alpha (ACACA), transcript variant 2 | NM_198839.1 | 0.473 | 6.06e-08 |
| 100718 | Adenylate kinase 3 (AK3) | NM_016282.2 | 0.445 | 6.06e-08 |
| 213748 | Hypothetical protein LOC284106 (LOC284106) | XM_375449.1 | 0.304 | 7.54e-08 |
| 216045 | Phosphodiesterase 4D, cAMP-specific (PDE4D) | NM_006203.3 | 0.670 | 7.54e-08 |
| 218317 | Ferritin heavy-chain (FTH1) | NM_213975.1 | 0.332 | 8.53e-08 |
| 211683 | Ferritin heavy-chain (FTH1) | NM_213975.1 | 0.537 | 9.79e-08 |
| 202380 | Protein phosphatase 1, regulatory subunit 2 pseudogene 3 (PPP1R2P3) | NR_002168.1 | 0.497 | 1.16e-07 |
| 103450 | 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) (HMGCS1) | NM_002130.4 | 0.387 | 1.16e-07 |
| 210738 | Ferritin heavy-chain (FTH1) | NM_213975.1 | 0.538 | 1.65e-07 |
| 217101 | Leucine zipper protein 1 (LUZP1) | NM_033631.2 | 0.741 | 1.84e-07 |
| 209872 | Aldo-keto reductase family 1, member C4 (AKR1C4) | NM_001818.2 | 0.634 | 3.65e-07 |
| 101435 | Muscle-specific intermediate filament desmin (LOC396725) | NM_001001535.1 | 0.559 | 4.57e-07 |
| 207680 | Myelin expression factor 2 (MYEF2) | NM_016132.2 | 0.344 | 8.37e-07 |
| 103619 | Glucan (1,4-alpha-), branching enzyme 1 (GBE1) | NM_000158.1 | 0.417 | 1.44e-06 |
| 205158 | Glutathione S-transferase (MGST1) | NM_214300.1 | 0.447 | 1.59e-06 |
| 103416 | Peroxiredoxin 3 (PRDX3), nuclear gene encoding mitochondrial protein | NM_014098.2 | 0.436 | 1.68e-06 |
| 210951 | Ferritin heavy-chain (FTH1) | NM_213975.1 | 0.491 | 1.94e-06 |
| 214541 | Homeo box (H6 family) 1 (HMX1) | NM_018942.1 | 0.334 | 2.17e-06 |
| 217401 | Phosphate regulating gene (Phex) | NM_011077.1 | 0.592 | 2.82e-06 |
| 201622 | Hypothetical protein LOC285016 (LOC285016) | NM_001002919.1 | 0.591 | 3.08e-06 |
| 217377 | 0.607 | 3.40e-06 | ||
| 217497 | Similar to coronin, actin binding protein, 2B (LOC517030) | XM_595194.1 | 0.507 | 3.43e-06 |
| 101570 | Sorting nexin 3 (SNX3), transcript variant 1 | NM_003795.3 | 0.230 | 3.61e-06 |
| 216333 | Brca1 associated protein 1 (Bap1) | NM_027088.1 | 0.297 | 3.74e-06 |
| 101369 | Translocase of inner mitochondrial membrane 13 homolog (TIMM13) | NM_012458.2 | 0.333 | 3.98e-06 |
| 216897 | Zinc finger protein 229 (ZNF229) | NM_014518.1 | 0.696 | 3.98e-06 |
| 201672 | 0.411 | 4.07e-06 | ||
| 100874 | Ubiquitin-conjugating enzyme E2R 2 (UBE2R2) | NM_017811.3 | -0.453 | 4.31e-06 |
| 217389 | SMAD, mothers against DPP homolog 1 (Drosophila) (SMAD1) | NM_001003688.1 | 0.623 | 5.08e-06 |
| 103364 | Sulfotransferase family, cytosolic, 2A, member 1 (SULT2A1) | NM_003167.2 | 0.325 | 5.08e-06 |
| 214446 | 0.484 | 5.08e-06 | ||
| 103263 | Retinol dehydrogenase 12 (all-trans and 9-cis) (RDH12) | NM_152443.1 | 0.336 | 6.64e-06 |
| 220907 | 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) (HMGCS1) | NM_002130.4 | 0.363 | 7.29e-06 |
| 217413 | Suppressor of cytokine signaling 5 (SOCS5), transcript variant 1 | NM_014011.4 | 0.609 | 8.04e-06 |
| 209887 | 0.416 | 8.52e-06 | ||
| 211211 | KIAA0999 protein (KIAA0999) | NM_025164.3 | 0.284 | 9.46e-06 |
| 104110 | Cytochrome P450 51 (CYP51) | NM_214432.1 | 0.365 | 9.98e-06 |
| 204992 | 0.381 | 1.12e-05 | ||
| 100545 | Isopentenyl-diphosphate delta isomerase (IDI1) | NM_004508.2 | 0.365 | 1.38e-05 |
| 100618 | Myelin basic protein (MBP) | NM_001001546.1 | 0.272 | 1.38e-05 |
| 104176 | Aminolevulinate, delta-, synthase 1 (ALAS1), transcript variant 1 | NM_000688.4 | 0.407 | 1.42e-05 |
| 211043 | Testis expressed sequence 261 (TEX261) | NM_144582.2 | 0.390 | 1.42e-05 |
| 209191 | Chromosome 20 open reading frame 50 (C20orf50) | XM_046437.7 | 0.416 | 1.42e-05 |
| 221311 | 0.331 | 1.42e-05 | ||
| 201823 | Cytochrome b-5 (CYB5) | NM_001001770.1 | 0.439 | 1.66e-05 |
| 209002 | Malic enzyme 2, NAD(+)-dependent, mitochondrial (ME2) | NM_002396.3 | -0.232 | 1.66e-05 |
| 212725 | Immunoglobulin superfamily, member 8 (IGSF8) | NM_052868.1 | 0.181 | 1.89e-05 |
| 203290 | Hypothetical protein MGC33214 (MGC33214) | NM_153354.2 | -0.268 | 2.10e-05 |
| 103537 | Regulatory factor X, 2 (influences HLA class II expression) (RFX2) | NM_000635.2 | 0.495 | 2.16e-05 |
| 211919 | 0.430 | 2.16e-05 | ||
| 220629 | Chromosome 6 open reading frame 89 (C6orf89) | gi|47271470|ref| | -0.451 | 2.16e-05 |
| 200365 | HDCMA18P protein (HDCMA18P) | NM_016648.1 | -0.342 | 2.23e-05 |
| 207244 | Superoxide dismutase 1, soluble (SOD1) | NM_000454.4 | 0.267 | 2.26e-05 |
| 102085 | Steroid membrane binding protein (PGRMC1) | NM_213911.1 | 0.265 | 2.33e-05 |
| 103751 | Glutathione peroxidase 4 (GPX4) | NM_214407.1 | 0.447 | 2.34e-05 |
| 204615 | Solute carrier organic anion transporter family, member 1B3 (SLCO1B3) | NM_019844.1 | 0.297 | 2.65e-05 |
| 102131 | Integral membrane protein 2B (ITM2B) | NM_021999.2 | 0.327 | 2.95e-05 |
| 100094 | Poly(A) binding protein, cytoplasmic 1 (PABPC1) | NM_002568.3 | 0.375 | 3.07e-05 |
| 201085 | 0.344 | 3.16e-05 | ||
| 219913 | Similar to Probable RNA-dependent helicase p68 (LOC505151) | XM_581395.1 | 0.418 | 3.21e-05 |
| 215566 | Protein phosphatase 4 (formerly X), catalytic subunit (PPP4C) | NM_002720.1 | 0.330 | 3.37e-05 |
| 216418 | Similar to omega protein (LOC91353) | NM_001013618.1 | 0.240 | 3.54e-05 |
| 215949 | Hypothetical LOC400120 (LOC400120) | NM_203451.1 | 0.604 | 3.56e-05 |
| 103431 | C-myc binding protein (MYCBP) | NM_012333.3 | 0.236 | 3.98e-05 |
| 101450 | 0.306 | 4.34e-05 | ||
| 209773 | Similar to protein RAKc (LOC439947) | XM_495795.1 | 0.462 | 4.46e-05 |
| 105008 | Cytochrome P450 19A2 (CYP19A2) | NM_214430.1 | 0.418 | 5.57e-05 |
| 103550 | Phosphoenolpyruvate carboxykinase 1 (soluble) (PCK1) | NM_002591.2 | -0.299 | 5.57e-05 |
| 206124 | Solute carrier family 24, member 5 (SLC24A5) | NM_205850.1 | -0.211 | 5.96e-05 |
| 212000 | Upstream of NRAS (UNR), transcript variant 2 | NM_007158.4 | 0.239 | 5.96e-05 |
| 214660 | HSPC038 protein (LOC51123) | NM_016096.2 | 0.232 | 6.01e-05 |
Gene profiling was done using 30 arrays and analysed using linear models. Fold change (M-values) and statistical significance (FDR-adjusted p-values) is shown. The clone names refer to hits to human, mouse or pig genes. Some genes are represented by several different clones on the array and may therefore show up more than once in the table, while some have no hits to the abovementioned species.