Table 2.
Predicted protein-protein interaction pairs using different set of reference genomes.
| Reference genome | No. clusters >2 | No. Co-Conserved predicted pairs | No. Co-Conserved proteins |
| Aerobic | 105 | 3,890 | 1,233 |
| All | 122 | 9,539 | 1,539 |
| All (Inverse homology) | 129 | 6,469 | 1,557 |
| High GC Gram positive | 27 | 4,237 | 1,058 |
| Low GC Gram positive | 33 | 34,968 | 1,325 |
| Motile | 88 | 24,198 | 1,972 |
| Proteobacteria | 101 | 48,730 | 2,119 |
| Selected | 109 | 3,839 | 1,206 |
Pearson correlation coefficient with confidence 0.8 and E-value of 10-15 were used on binary profile vectors unless noted.