TABLE 2.

Results of the bottleneck analyses for the putatively neutral and candidate loci data sets

	Neutral			Candidate
	HEQ (SMM)	HEQ (TPM)	HE	HEQ (SMM)	HEQ (TPM)	HE
Merirastila	0.82	0.80	0.76	0.54	0.52***	0.56
Orrevatnet	0.67	0.64**	0.65	0.47***	0.46***	0.61
Barents	0.79	0.73	0.77	0.49	0.47***	0.54
Lake Vättern	0.79	0.73	0.78	0.46**	0.44***	0.54
Lake Pulmanki	0.72	0.70	0.67	0.39***	0.38***	0.55
Lake Kevo	0.65	0.63	0.52	0.42**	0.41***	0.52
River Neretva	0.68	0.65	0.55	0.48**	0.47***	0.59

The average of the equilibrium heterozygosity based on the observed number alleles (H_EQ) assuming either a step-wise mutation model (SMM) or a two-phase mutation model (TPM), and the expected heterozygosity (H_E).

**P < 0.01; ***P < 0.001.