TABLE 4.

Estimated haplotype, polygenic, total genetic (±SE), and residual (±SE) variances and heritabilities at different values of r² between adjacent markers for the high-heritability trait

Analysis	r2 SNP	Haplotype	Polygenic	Total geneticab	Residuala	h2
Simulatedc		0.50			0.50	0.50
Polygenic			0.485		0.455	0.516
SNP1	0.099	0.220	0.412	0.632	0.481	0.543
	0.123	0.103	0.379	0.482	0.490	0.491
	0.147	0.163	0.274	0.437	0.501	0.454
	0.191	0.353	0.150	0.503	0.517	0.463
	0.213	0.303	0.090	0.393	0.524	0.420
SNP2	0.099	0.155	0.361	0.516	0.489	0.502
	0.123	0.111	0.328	0.439	0.499	0.464
	0.147	0.193	0.216	0.409	0.507	0.436
	0.191	0.347	0.100	0.447	0.521	0.440
	0.213	0.315	0.046	0.361	0.514	0.398
HAP_IBD2	0.099	0.165	0.088	0.253	0.472	0.347
	0.123	0.200	0.077	0.276	0.463	0.370
	0.147	0.195	0.049	0.244	0.464	0.340
	0.191	0.195	0.028	0.222	0.452	0.328
	0.213	0.228	0.019	0.247	0.442	0.356
HAP_IBD10	0.099	0.178	0.100	0.278	0.471	0.370
	0.123	0.214	0.086	0.299	0.468	0.387
	0.147	0.223	0.045	0.268	0.476	0.357
	0.191	0.233	0.037	0.269	0.472	0.362
	0.213	0.262	0.028	0.290	0.462	0.383

^aStandard errors across replicates were calculated as the standard deviation of the estimated variances divided by and ranged from 0.013 to 0.102 for the total genetic variance and from 0.009 to 0.020 for the residual variance.

^bThe sum of estimated QTL and polygenic variances.

^cThe average simulated QTL and residual variances across replicates.