Table 1.
Haplotype sequence contig length, number of gaps and HLA allele types
| Haplotype | Length (bp) | Gaps | HLA-A | HLA-B | HLA-C | HLA-DQA1 | HLA-DQB1 | HLA-DRB1 |
|---|---|---|---|---|---|---|---|---|
| PGF | 4754829 | 0 | A*03010101 | B*070201 | Cw*07020103 | DQA1*010201 | DQB1*0602 | DRB1*150101 |
| COX | 4731878 | 0 | A*01010101 | B*080101 | Cw*070101 | DQA1*050101 | DQB1*020101 | DRB1*030101 |
| QBL | 4249272 | 5 | A*260101 | B*180101 | Cw*050101 | DQA1*050101 | DQB1*020101 | DRB1*030101 |
| APD | 4160965 | 16 | A*01010101 | – | – | – | – | − |
| DBB | 2330101 | 28 | A*02010101 | – | Cw*06020101 | DQA1*0201 | DQB1*030302 | DRB1*070101 |
| MANN | 4191014 | 10 | A*290201 | B*440301 | Cw*160101 | DQA1*0201 | DQB1*0202 | DRB1*070101 |
| MCF | 4087413 | 15 | [A*020101] | B*15010101 | Cw*030401 | DQA1*0303 | DQB1*030101 | – |
| SSTO | 3704249 | 22 | A*320101 | B*44020101 | Cw*050101 | DQA1*030101 | DQB1*030501 | DRB1*040301 |
Sequence length (bp) and number of gaps in each haplotype sequence, together with the HLA gene types obtained by BLAST against the IMGT/HLA database. Dashes or data in square brackets indicate the absence or the partial presence, respectively, of a gene owing to a sequence gap.