Table 6.
Gene annotation statistics for eight MHC haplotypes
| Locus type | PGF | COX | QBL | SSTO | APD | DBB | MANN | MCF |
|---|---|---|---|---|---|---|---|---|
| Coding | 165 | 159 | 150 | 131 | 82 | 146 | 129 | 150 |
| Transcript | 28 | 28 | 26 | 26 | 19 | 26 | 27 | 22 |
| Putative | 18 | 18 | 15 | 15 | 6 | 16 | 12 | 14 |
| Pseudogenes total | 98 | 95 | 93 | 98 | 59 | 92 | 95 | 75 |
| Unprocessed | 50 | 48 | 48 | 53 | 36 | 52 | 53 | 42 |
| Processed | 41 | 42 | 40 | 39 | 19 | 34 | 37 | 28 |
| Expressed | 7 | 5 | 5 | 6 | 4 | 6 | 5 | 5 |
| Artefact | 11 | 11 | 10 | 11 | 0 | 0 | 0 | 0 |
| Total loci | 320 | 311 | 294 | 281 | 166 | 281 | 264 | 261 |
| Total variants | 1,267 | 1,191 | 1,155 | 1,058 | 568 | 1,138 | 960 | 1,115 |
Annotation statistics for loci in each haplotype. For definitions of locus types see “Materials and methods”.