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. 2008 Jan 30;3(1):e1514. doi: 10.1371/journal.pone.0001514

Table 1. Root mean square deviations (RMSD) of AprB and AprA comparative models from SRP and SOB with respect to the A. fulgidus template structure.

Spezies AprB AprA
1.+2. segment 3. segment
AA RMSD for backbone/Cα atoms in Inline graphic (no. of atoms involved in calculation) AA RMSD for backbone/Cα atoms in Inline graphic (no. of atoms involved in calculation) AA RMSD for backbone/Cα atoms in Inline graphic (no. of atoms involved in calculation)
SOB Apr lineage I
Allochromatium vinosum 2-102 0.63 (392)/0.47 (98) 103-156 1.50 (184)/1.27 (46) 2-620 0.88 (2424)/0.84 (606)
Thiobacillus denitrificans 2-102 0.62 (392)/0.46 (98) 103-156 1.22 (184)/1.14 (46) 2-622 0.79 (2432)/0.73 (608)
Cdt. Ruthia magnifica 2-101 0.59 (392)/0.41 (98) 102-155 1.46 (184)/1.30 (46) 2-625 0.96 (2432)/0.94 (608)
Pelagibacter ubique 2-101 0.55 (392)/0.35 (98) 102-153 1.56 (184)/1.37 (46) 2-614 1.16 (2400)/1.15 (600)
EBAC2C11 2-101 0.53 (392)/0.34 (98) 102-153 1.53 (184)/1.28 (46) 2-614 1.46 (2400)/1.48 (600)
Crenarchaeal SRP
Caldivirga maquilingensis 2-104 0.82 (392)/0.68 (98) 105-154 1.69 (180)/1.56 (45) 2-627 0.88 (2460)/0.82 (615)
Pyrobaculum calidifontis 2-101 0.59 (392)/0.44 (98) 102-151 3.28 (168)/3.23 (42) 2-627 1.16 (2440)/1.17 (610)
SRB and related SOB Apr lineage-II
Desulfotomaculum reducens 2-104 0.08 (412)/0.05 (103) 105-147 2.11 (172)/2.20 (45) 2-624 0.82 (2456)/0.78 (614)
Syntrophobacter fumaroxidans 2-104 0.08 (412)/0.06 (103) 105-147 0.83 (172)/0.78 (43) 2-634 0.71 (2476)/0.65 (619)
fosws7f8 2-104 0.09 (412)/0.07 (103) 105-146 0.87 (180)/0.95 (45) 2-630 0.66 (2480)/0.62 (620)
fosws39f7 2-104 0.00 (412)/0.00 (103) 105-146 0.00 (168)/0.00 (42) 2-634 0.70 (2484)/0.64 (621)
Thermodesulfobacterium commune 2-104 0.08 (412)/0.06 (103) 105-152 0.61 (184)/0.50 (46) 2-664 0.97 (2524)/0.92 (631)
Desulfovibrio vulgaris 2-104 0.08 (412)/0.06 (103) 105-148 0.67 (176)/0.61 (44) 2-664 1.54 (2512)/1.53 (628)
Desulfovibrio desulfuricans 2-104 0.08 (412)/0.06 (103) 105-148 0.65 (176)/0.60 (44) 2-662 1.01 (2520)/0.98 (630)
Desulfotalea psychrophila 2-104 0.08 (412)/0.06 (103) 105-138 3.21 (140)/3.18 (35) 2-671 1.04 (2512)/1.00 (628)
Desulfobulbus sp. MLMS1 2-104 0.08 (412)/0.06 (103) 105-139 3.21 (140)/3.18 (35) 2-669 1.14 (2516)/1.11 (629)
O. algarvensis Delta 1 symbiont 2-104 0.09 (412)/0.06 (103) 105-147 1.31 (172)/1.36 (43) 2-659 1.20 (2504)/1.18 (626)
Thermodesulfovibrio yellowstonii 2-104 0.08 (412)/0.06 (103) 105-142 1.46 (140)/1.28 (35) 2-662 1.05 (2492)/1.00 (623)
Chlorobaculum tepidum 2-104 0.09 (412)/0.06 (103) 105-140 0.09 (144)/0.07 (36) 2-658 0.91 (2492)/0.88 (623)
Thiobacillus denitrificans 2-110 0.38 (412)/0.22 (103) 111-157 1.81 (176)/1.89 (44) 2-666 0.82 (2492)/0.79 (623)