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. 2007 Nov 22;6:154. doi: 10.1186/1475-2875-6-154

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Copyright © 2007 Garg et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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The linkage disequilibrium (LD) plot showing non-random association between nucleotide variants at different polymorphic sites. The R^{^2}values are plotted against the nucleotide distances with two-tailed Fisher's exact test of significance using DnaSP. The value of LD index (range from -1 to +1) declines with increasing nucleotide distance, indicating that recombination events are taking place. The analysis was performed considering all polymorphic sites. (A) Assam, (B) Orissa, (C) A & N, (D) Goa, (E) UP, and (F) Total.