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. 2008 Jan 18;4(1):e3. doi: 10.1371/journal.pgen.0040003

Figure 5. A Simplified Schematic of the Repetitive Sequence Flanking New Genes and Their Distribution over the D. melanogaster Subgroup Phylogeny.

Figure 5

Left panel displays the varying degrees of identity and degeneration between flanking regions of paralogs, with the right panel displaying the branches in which they are found; 1: (CG2952:CG2952-r), (kep1: CG4021), (kep1:CG9337), (CG9902:CG7692), (kep1:CG3875); 2: (CG3875-CG3927); 3: (CG9337-CG9337-r); 4: (mkgr-mkgr2); 5: (CR9337-CR33318); 6: (CG3101-CG3101-r). The red blocks in the left panel indicate alignable regions of the TEs and other repeat sequences. The black boxes represent sequences of TEs and other repeats; fragmented black boxes represent RE fragments. The long boxes in various colors represent the identified new genes. See also Figure S1, for the alignments.