Table 5.
Sequence divergence of shared, paralogous loci, displaying four different evolutionary dynamics.
| Locus | Identifier | Annotation | Sequence identity: | ||
| Chr4 | Chr8 | CDS | 3'UTR | ||
| Conserved CDS/Conserved NCS | |||||
| 1 | Tb927.4.5390 | Tb927.8.6930 | serine/threonine-protein kinase NrkA | 0.983 | 0.968 |
| 2 | Tb927.4.5380 | Tb927.8.6940 | quinonprotein alcohol dehydrogenase-like | 0.993a | 0.995 |
| 3 | Tb927.4.5370 | Tb927.8.6950 | dynein light chain 2B | 0.994 | 0.994 |
| 4 | Tb927.4.5360 | Tb927.8.6960 | TMH/SP | 0.987 | 0.984 |
| 5 | Tb927.4.5350 | Tb927.8.6970 | 3-methylcrotonyl-CoA carboxylase | 0.983b | 0.984 |
| 22 | Tb927.4.5020 | Tb927.8.7400 | RNA polymerase IIA largest subunit | 0.999 | 1 |
| 24 | Tb927.4.5000 | Tb927.8.7420 | C2 calcium/lipid-binding region, CaLB | 0.995a | 0.966 |
| 30 | Tb927.4.4930 | Tb927.8.7490 | 0.987 | 0.956 | |
| 64 | Tb927.4.4150 | Tb927.8.8180 | 0.991 | 0.995 | |
| 65 | Tb927.4.4140 | Tb927.8.8190 | 0.986 | 0.981 | |
| 67 | Tb927.4.4120 | Tb927.8.8210 | 0.984 | 0.982 | |
| Divergent CDS/Divergent NCS | |||||
| 7 | Tb927.4.5330 | Tb927.8.7060 | EGF/Laminin domain | 0.235 | 0.165 |
| 10 | Tb927.4.5240 | Tb927.8.7140 | UDP-GlcNAc-dependent glycosyltransferase | 0.455 | 0.258 |
| 11 | Tb927.4.5230 | Tb927.8.7180 | 0.385 | 0.181 | |
| 12 | Tb927.4.5220 | Tb927.8.7190 | SP | 0.402 | 0.09 |
| 18 | Tb927.4.5120 | Tb927.8.7260 | kinetoplast-associated protein | 0.368 | 0.365 |
| 29 | Tb927.4.4940 | Tb927.8.7480 | phosphopantetheine attachment site | 0.491a | 0.427 |
| 33 | Tb927.4.4900 | Tb927.8.7550 | 0.282 | 0.16 | |
| 34 | Tb927.4.4890 | Tb927.8.7560 | TMH | 0.454 | 0.137 |
| 35 | Tb927.4.4880 | Tb927.8.7580 | TMH/SP, Zn-finger protein | 0.48a | 0.264 |
| 38 | Tb927.4.4810 | Tb927.8.7710 | TMH | 0.402 | 0.425 |
| 39 | Tb927.4.4790 | Tb927.8.7720 | TMH/SP | 0.391 | 0.288 |
| 42 | Tb927.4.4580 | Tb927.8.7750 | protein kinase | 0.446 | 0.422 |
| 46 | Tb927.4.4530 | Tb927.8.7800 | SPla/RYanodine receptor SPRY | 0.407b | 0.47 |
| 47 | Tb927.4.4520 | Tb927.8.7820 | cold-shock protein, DNA-binding | 0.434 | 0.222 |
| 48 | Tb927.4.4500 | Tb927.8.7830 | 0.34 | 0.25 | |
| 51 | Tb927.4.4400 | Tb927.8.7950 | leucine rich repeat | 0.433ab | 0.25 |
| 57 | Tb927.4.4310 | Tb927.8.8050 | spectrin repeat | 0.366 | 0.152 |
| 59 | Tb927.4.4240 | Tb927.8.8070 | Zinc finger, C2H2-type | 0.145 | 0.258 |
| 60 | Tb927.4.4220 | Tb927.8.8140 | small GTP-binding rab protein | 0.452 | 0.433 |
| 62 | Tb927.4.4180 | Tb927.8.8160 | 0.48a | 0.186 | |
| 69 | Tb927.4.4040 | Tb927.8.8280 | 0.436 | 0.209 | |
| 71 | Tb927.4.3970 | Tb927.8.8320 | 0.277 | 0.302 | |
| Conserved CDS/Divergent NCS | |||||
| 9 | Tb927.4.5310 | Tb927.8.7110 | serine/threonine-protein kinase A | 0.845b | 0.239 |
| 15 | Tb927.4.5160 | Tb927.8.7240 | TMH/SP | 0.837 | 0.169 |
| 17 | Tb927.8.7250 | 0.958 | 0.4 | ||
| 20 | Tb927.4.5050 | Tb927.8.7380 | dihydrolipoamide dehydrogenase | 0.924b | 0.303 |
| 45 | Tb927.4.4540 | Tb927.8.7790 | LSD1 zinc finger | 0.818 | 0.227 |
| 54 | Tb927.4.4360 | Tb927.8.8020 | monoglyceride lipase | 0.783b | 0.199 |
| 56 | Tb927.4.4330 | Tb927.8.8040 | diadenosine tetraphosphatase | 0.781 | 0.214 |
| Divergent CDS/Conserved NCS | |||||
| 63 | Tb927.4.4160 | Tb927.8.8170 | SP, CheY-like domain | 0.773 | 0.901 |
| 65 | Tb927.4.5150 | Tb927.8.7240 | 0.901 | 0.983 | |
a denotes evidence for 'constant but different' non-synonymous mutations.
b denotes evidence for significant rate asymmetry between retained paralogs.