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. 2007 Nov 2;94(4):1412–1427. doi: 10.1529/biophysj.107.111096

TABLE 4.

Binding free energies (kcal/mol) calculated by the LIE method

DmADH
DlADH
Ionization scenario PYR TFE PYR TFE
A: Inline graphic* −12.09 −9.0 −8.52 −8.85
B: Ser-OH/Tyr-O/Lys-NH2* −8.06 −7.99 −7.02 −8.39
C: Inline graphic* −6.78 −7.79 −6.47 −7.58
C: Inline graphic −7.03/−6.50§ −7.99/−8.35§ −7.85/−7.89§ −8.40/−7.60§
*

Energy after MD of the monomer (subunit A).

energy after MD of the dimer.

subunit A.

§

subunit B.