Table 2.

The forty most repressed genes in 435/BRMS cells relative to 435 cells.

Accession no.a	Gene symbol	Function	Signal Log Ratiob	FDR adj. P-valuec
NM_032525	TUBB6	unknown	−3.877230	0.005884
NM_000550	TYRP1	metabolism	−3.718408	0.003087
NM_000615, 181351	NCAM1	cell adhesion	−3.224920	0.000796
NM_014227	SLC5A4	transport - sugar and ions	−3.217907	0.010679
NM_005971, 021910	FXYD3	transport - ions	−3.019978	0.016583
NM_001647	APOD	transport - lipid	−2.853765	0.014191
NM_00100133, 016229	CYB5R2	transport - electron	−2.790324	0.001659
NM_006499, 201543-45	LGALS8	extracellular sugar binding	−2.782567	0.001461
NM_002615	SERPINF1	cell proliferation	−2.606028	0.005884
NM_00609	ATP8A1	transport - aminophospholipid	−2.563899	0.000818
NM_005944, 001004196	CD200	unknown	−2.436624	0.012907
NM_006877	GMPR	metabolism	−2.384433	0.000663
NM_017694	FLJ20160	unknown	−2.334477	0.012502
XM_372574	LOC390595	unknown	−2.315783	0.017422
NM_007078	LDB3	cytoskeleton, protein binding	−2.312725	0.016837
NM_000212	ITGB3	cell adhesion, signal transduction	−2.248644	0.007499
---------------	LOC401022	unknown	−2.228267	0.002154
NM_005761	PLXNC1	cell adhesion	−2.226256	0.036549
NM_005328	HAS2	ECM component metabolism	−2.152467	0.015516
NM_152309	PIK3AP1	lipid binding	−2.150887	0.005745
---------------	LOC283824	unknown	−2.124596	0.013738
NM_024505	NOX5	cell proliferation, cytokine secretion	−2.094189	0.030001
NM_007085	FSTL1	extracellular heparin binding	−2.086846	0.001659
NM_053042	KIAA1729	nucleic acid binding	−2.073675	0.013882
NM_152270	FLJ34922	unknown	−1.977802	0.026823
NM_203463	LASS6	cell proliferation, metabolism	−1.948670	0.001461
NM_014654	SDC3	cytoskeletal protein binding	−1.928120	0.016836
NM_001002034	LOC150368	unknown	−1.914849	0.000631
NM_012228	MSRB2	transcription factor	−1.907740	0.019284
NM_014782, 177949	ARMCX2	binding	−1.905816	0.010707
---------------	KIAA1295	unknown	−1.900952	0.007121
NM_000070, 024344, 173087-90, 212464-65, 212467
	CAPN3	signal transduction, cell adhesion	−1.866039	0.026170
NM_006236	POU3F3	transcription factor	−1.829551	0.002536
NM_005380, 182744	NBL1	apoptosis	−1.829396	0.000799
NM_000935, 182943	PLOD2	protein modification	−1.828234	0.001461
NM_003500	ACOX2	metabolism	−1.793333	0.031810
NM_015150	RAFTLIN	unknown	−1.776159	0.015190
NM_005160	ADRBK2	signal transduction	−1.763304	0.015429
NM_003812	ADAM23	cell adhesion	−1.751657	0.001461
NM_000660	TGFB1	cell proliferation, signal transduction	−1.751519	0.013738

^aGenBank accession number

^bSignal Log ratio: power value is 2, for example −3.877230 is equal to 2^−3.877230.

^cFor explanation of processing used to obtain FDR-adjusted P-value see materials and d. methods.