Table 3.

The performance of PSSM based SVM models on proteins with and without PSI-BLAST hits at e-value 0.1 against DNAset. These models were trained and tested on DNAset.

Threshold	With PSI-BLAST hit		Without PSI-BLAST hit
	Sensitivity	Specificity	Sensitivity	Specificity
-1	95.83	48.21	97.54	42.78
-0.9	95.83	53.57	96.72	44.33
-0.8	95.83	53.57	96.72	45.88
-0.7	95.83	57.14	95.90	48.97
-0.6	91.67	62.50	95.90	51.55
-0.5	91.67	64.29	95.08	54.12
-0.4	91.67	66.07	93.44	57.73
-0.3	87.50	66.07	92.62	60.31
-0.2	83.33	69.64	91.80	63.40
-0.1	83.33	73.21	89.34	66.49
0	83.33	76.79	86.89	69.07
0.1	83.33	82.14	83.61	71.65
0.2	83.33	83.93	80.33	75.77
0.3	83.33	83.93	77.87	78.87
0.4	75.00	85.71	73.77	81.44
0.5	75.00	85.71	69.67	82.99
0.6	75.00	89.29	64.75	85.05
0.7	75.00	92.86	60.66	88.66
0.8	62.50	94.64	56.56	89.69
0.9	62.50	96.43	50.00	91.75
1	54.17	96.43	45.08	93.30