Table 2. Average nucleotide variant counts (N scores) of 17 conserved sites compared to the mean of 20 random sites in all potyvirus genomes from 1985 to 2005.
conserved sites | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | Yr 96 | 97 | 98 | 99 | 00 | 01 | 02 | 03 | 04 | 05 |
7587 | 0.00 | 0.00 | 0.00 | 0.20 | 0.20 | 0.20 | 0.20 | 0.30 | 0.40 | 0.40 | 0.40 | 0.40 | 0.45 | 0.45 | 0.45 | 0.45 | 0.50 | 0.50 | 0.50 | 0.50 | 0.55 |
9237 | 0.00 | 0.00 | 0.00 | 0.25 | 0.35 | 0.35 | 0.40 | 0.50 | 0.50 | 0.50 | 0.55 | 0.60 | 0.60 | 0.60 | 0.60 | 0.60 | 0.60 | 0.60 | 0.60 | 0.60 | 0.60 |
4545 | 0.00 | 0.00 | 0.00 | 0.10 | 0.25 | 0.25 | 0.30 | 0.45 | 0.45 | 0.50 | 0.50 | 0.50 | 0.50 | 0.50 | 0.50 | 0.50 | 0.55 | 0.55 | 0.65 | 0.65 | 0.65 |
4539 | 0.00 | 0.00 | 0.00 | 0.09 | 0.26 | 0.26 | 0.30 | 0.43 | 0.43 | 0.43 | 0.57 | 0.57 | 0.57 | 0.57 | 0.61 | 0.65 | 0.70 | 0.70 | 0.78 | 0.78 | 0.78 |
9162 | 0.00 | 0.00 | 0.00 | 0.18 | 0.29 | 0.29 | 0.29 | 0.35 | 0.35 | 0.47 | 0.53 | 0.53 | 0.53 | 0.53 | 0.53 | 0.65 | 0.71 | 0.71 | 0.76 | 0.76 | 0.82 |
8278 | 0.00 | 0.00 | 0.00 | 0.32 | 0.42 | 0.42 | 0.47 | 0.53 | 0.68 | 0.74 | 0.74 | 0.74 | 0.74 | 0.74 | 0.74 | 0.74 | 0.79 | 0.84 | 0.84 | 0.84 | 0.84 |
4458 | 0.00 | 0.00 | 0.00 | 0.10 | 0.35 | 0.35 | 0.45 | 0.60 | 0.75 | 0.75 | 0.80 | 0.85 | 0.85 | 0.85 | 0.85 | 0.85 | 0.85 | 0.85 | 0.85 | 0.85 | 0.85 |
7899 | 0.00 | 0.00 | 0.00 | 0.20 | 0.30 | 0.30 | 0.35 | 0.45 | 0.45 | 0.45 | 0.50 | 0.55 | 0.55 | 0.55 | 0.70 | 0.70 | 0.70 | 0.75 | 0.75 | 0.75 | 0.85 |
9099 | 0.00 | 0.00 | 0.00 | 0.15 | 0.30 | 0.30 | 0.35 | 0.45 | 0.45 | 0.45 | 0.60 | 0.75 | 0.85 | 0.85 | 0.90 | 0.90 | 0.90 | 0.90 | 0.90 | 0.90 | 0.90 |
7911 | 0.00 | 0.00 | 0.00 | 0.18 | 0.36 | 0.36 | 0.41 | 0.64 | 0.68 | 0.68 | 0.86 | 0.86 | 0.86 | 0.86 | 0.86 | 0.86 | 0.86 | 0.86 | 0.86 | 0.86 | 0.95 |
7545 | 0.00 | 0.00 | 0.00 | 0.09 | 0.30 | 0.30 | 0.35 | 0.48 | 0.70 | 0.74 | 0.83 | 0.87 | 0.87 | 0.91 | 0.91 | 0.96 | 0.96 | 0.96 | 1.00 | 1.00 | 1.00 |
7722 | 0.00 | 0.00 | 0.00 | 0.25 | 0.30 | 0.30 | 0.40 | 0.45 | 0.50 | 0.50 | 0.60 | 0.65 | 0.70 | 0.70 | 0.80 | 0.85 | 0.85 | 0.85 | 0.85 | 0.90 | 1.00 |
3888 | 0.00 | 0.00 | 0.00 | 0.15 | 0.40 | 0.40 | 0.50 | 0.65 | 0.70 | 0.70 | 0.75 | 0.90 | 0.90 | 0.90 | 0.90 | 0.95 | 0.95 | 1.00 | 1.00 | 1.00 | 1.05 |
8853 | 0.00 | 0.00 | 0.00 | 0.10 | 0.25 | 0.25 | 0.25 | 0.45 | 0.45 | 0.50 | 0.55 | 0.75 | 0.75 | 0.75 | 0.75 | 0.75 | 0.85 | 0.90 | 1.00 | 1.00 | 1.10 |
8901 | 0.00 | 0.00 | 0.00 | 0.10 | 0.20 | 0.20 | 0.40 | 0.50 | 0.65 | 0.65 | 0.80 | 0.80 | 0.85 | 0.85 | 0.85 | 0.85 | 0.85 | 1.15 | 1.20 | 1.20 | 1.20 |
9042 | 0.00 | 0.00 | 0.00 | 0.20 | 0.30 | 0.30 | 0.55 | 0.70 | 0.70 | 0.80 | 0.80 | 0.90 | 0.95 | 1.05 | 1.05 | 1.05 | 1.05 | 1.15 | 1.15 | 1.15 | 1.20 |
4396 | 0.00 | 0.00 | 0.00 | 0.11 | 0.26 | 0.26 | 0.32 | 0.47 | 0.47 | 0.53 | 0.58 | 0.63 | 0.63 | 0.68 | 0.74 | 0.74 | 0.79 | 0.84 | 0.95 | 1.11 | 1.21 |
Mean | 0.00 | 0.00 | 0.00 | 0.16 | 0.30 | 0.30 | 0.37 | 0.49 | 0.55 | 0.58 | 0.64 | 0.70 | 0.71 | 0.73 | 0.75 | 0.77 | 0.79 | 0.83 | 0.86 | 0.87 | 0.92 |
SD | 0.00 | 0.00 | 0.00 | 0.07 | 0.06 | 0.06 | 0.09 | 0.10 | 0.13 | 0.13 | 0.14 | 0.16 | 0.16 | 0.17 | 0.17 | 0.16 | 0.15 | 0.18 | 0.18 | 0.19 | 0.20 |
random sites mean | 0.00 | 0.00 | 0.00 | 0.41 | 0.88 | 0.88 | 1.05 | 1.29 | 1.41 | 1.46 | 1.59 | 1.69 | 1.72 | 1.74 | 1.78 | 1.81 | 1.85 | 1.91 | 1.94 | 1.98 | 2.02 |
random sites SD | 0.00 | 0.00 | 0.00 | 0.16 | 0.22 | 0.22 | 0.25 | 0.30 | 0.34 | 0.34 | 0.35 | 0.39 | 0.39 | 0.40 | 0.41 | 0.40 | 0.40 | 0.43 | 0.41 | 0.42 | 0.42 |